BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0233.p         (98 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2166 [K] COG0640 Predicted transcriptional regulators Mlo Mes...   118   3e-27
SMb21576 [K] COG0640 Predicted transcriptional regulators Sme Si...    76   2e-14
AGpA461 [K] COG0640 Predicted transcriptional regulators Atu Agr...    74   7e-14
RSp1129 [K] COG0640 Predicted transcriptional regulators Rso Ral...    72   3e-13
CC1505 Non COG                                                         72   3e-13

>mll2166 [K] COG0640 Predicted transcriptional regulators Mlo
          Mesorhizobium loti
          Length = 106

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 66/87 (75%)

Query: 2  HLEALGNPTRLKIYRALVRAGQAGLPVGRLQDKLKIAPSTLSHHVKTLVTAGLITQVREA 61
           LEALGNPTRL +YR LVRAG+AG PVG LQ+ L IA STLSHH+  L+  GL++Q R+A
Sbjct: 9  QLEALGNPTRLNLYRILVRAGEAGRPVGFLQESLGIAASTLSHHLHRLILTGLVSQERQA 68

Query: 62 TTLTCHANYDVMQGLVDFLVAECCADA 88
          TTL C ANY +M  L+ FL  ECCADA
Sbjct: 69 TTLICRANYPMMNDLIGFLADECCADA 95


>SMb21576 [K] COG0640 Predicted transcriptional regulators Sme
          Sinorhizobium meliloti
          Length = 121

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%)

Query: 5  ALGNPTRLKIYRALVRAGQAGLPVGRLQDKLKIAPSTLSHHVKTLVTAGLITQVREATTL 64
          AL   TRL I R LV AG  G+  G + +K+ ++PS +S H+K L   GLITQ RE+ ++
Sbjct: 12 ALSQETRLGIVRTLVVAGPVGMAAGAIAEKMGVSPSNVSFHLKELERTGLITQRRESRSI 71

Query: 65 TCHANYDVMQGLVDFLVAECC 85
             A+YD +  LV FL+ +CC
Sbjct: 72 VYSASYDALADLVKFLMEDCC 92


>AGpA461 [K] COG0640 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 119

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%)

Query: 5  ALGNPTRLKIYRALVRAGQAGLPVGRLQDKLKIAPSTLSHHVKTLVTAGLITQVREATTL 64
          AL   TRL I R LV AG  G+  G + ++ K++PS +S H+K L  AGLI Q REA ++
Sbjct: 12 ALSQETRLHIVRILVVAGPDGMAAGAVAERAKVSPSNVSFHLKELERAGLIKQKREARSI 71

Query: 65 TCHANYDVMQGLVDFLVAECCADATE 90
             ANY  +  L+ FL+ +CCA   E
Sbjct: 72 IYTANYHCLGALIRFLMEDCCAGHPE 97


>RSp1129 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 107

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 3   LEALGNPTRLKIYRALVRAGQAGLPVGRLQDKLKIAPSTLSHHVKTLVTAGLITQVREAT 62
           L AL +  RL+++R LV AG AGL  G + ++L +  +TLS H+K L+ A L+TQ R+  
Sbjct: 10  LAALAHSLRLRVFRMLVVAGPAGLTPGAIAEQLDVPGATLSFHLKELMNAALVTQERDGR 69

Query: 63  TLTCHANYDVMQGLVDFLVAECCADATECKDTSTAA 98
            L   A +D M GL+ FL   CC     C + S A 
Sbjct: 70  HLIYRAAFDHMNGLLGFLTENCC-QGEACPEFSAAG 104


>CC1505 Non COG
          Length = 109

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 54/88 (61%)

Query: 3  LEALGNPTRLKIYRALVRAGQAGLPVGRLQDKLKIAPSTLSHHVKTLVTAGLITQVREAT 62
          L AL +  RL I+R LV+AG AG+  G +   L + P++LS ++  L  +GLI   R+  
Sbjct: 2  LSALSHEGRLAIFRLLVQAGPAGVAAGEIARALNVLPNSLSANLNVLSHSGLIASRRDGR 61

Query: 63 TLTCHANYDVMQGLVDFLVAECCADATE 90
          ++   A+YD M GL+ FL+ +CCA A +
Sbjct: 62 SIIYTADYDAMTGLLGFLMEDCCAGAPQ 89