BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0213.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll3573 [E] COG0703 Shikimate kinase Mlo Mesorhizobium loti           192   4e-49
BMEI0042 [E] COG0703 Shikimate kinase Bme Brucella melitensis         180   2e-45
CC3008 [E] COG0703 Shikimate kinase Ccr Caulobacter vibrioides        171   1e-42
SMc00695 [E] COG0703 Shikimate kinase Sme Sinorhizobium meliloti      168   6e-42
AGl2400 [E] COG0703 Shikimate kinase Atu Agrobacterium tumefacie...   164   1e-40

>mll3573 [E] COG0703 Shikimate kinase Mlo Mesorhizobium loti
          Length = 203

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 121/171 (70%)

Query: 22  LGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIEAAADMTIPEIFESKGEPYFRD 81
           LG+RSIV VG+MGAGK+ IGR+VA  L LPF D+D EIE+ + MT+PE+FE  GE  FR 
Sbjct: 20  LGSRSIVFVGLMGAGKTAIGRKVATMLSLPFIDSDQEIESVSRMTVPELFERYGEAEFRA 79

Query: 82  GEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAISIWLKADSDIIMRRVRRRADRP 141
            E RVI R+L NGP VL+TGGGAFM  +TR  I    +S+WLKA+ D++M RV ++ +RP
Sbjct: 80  LEQRVILRVLENGPQVLSTGGGAFMNAQTREAIAGHGVSVWLKAELDLLMDRVSKKQNRP 139

Query: 142 LLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRIVDECLEALHAHL 192
           LL + DP A + RL+SER PVY T+D+T+ +RD   + I  E L AL  H 
Sbjct: 140 LLKSADPRAVLERLMSERYPVYATSDVTVPTRDDRKEVIAAEVLNALCRHF 190


>BMEI0042 [E] COG0703 Shikimate kinase Bme Brucella melitensis
          Length = 169

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 111/160 (69%)

Query: 33  MGAGKSTIGRRVAARLKLPFTDADTEIEAAADMTIPEIFESKGEPYFRDGEARVIARILG 92
           MGAGKSTIGR+VA  L LPF DADTEIE  + MT+ E+FE+ GE  FRD E RVI R+L 
Sbjct: 1   MGAGKSTIGRKVANMLNLPFKDADTEIETVSRMTVAELFEAYGEVEFRDLERRVILRLLD 60

Query: 93  NGPVVLATGGGAFMREETRNRIRDRAISIWLKADSDIIMRRVRRRADRPLLHTPDPEATV 152
           +GP+VLATGGGA+M  ETR  I +  ISIW+ AD D++M RV RR +RPLL   DP   +
Sbjct: 61  DGPMVLATGGGAYMNAETRAAIAEAGISIWINADLDVLMERVSRRQNRPLLRNSDPRGVM 120

Query: 153 NRLLSEREPVYRTADLTIASRDVPHDRIVDECLEALHAHL 192
            RL+ ER PVY  A+L + +RD   + I  E +E L AHL
Sbjct: 121 QRLMDERYPVYALAELHLMTRDEKKEVIAAELIEVLAAHL 160


>CC3008 [E] COG0703 Shikimate kinase Ccr Caulobacter vibrioides
          Length = 200

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 120/185 (64%), Gaps = 1/185 (0%)

Query: 8   APTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIEAAADMTI 67
           AP    + +D  A L  ++IVLVG+MG GKS++GRR+A  L LPF DAD E+EAAA  +I
Sbjct: 15  APEVAPIVSDDLAPLRAKTIVLVGLMGVGKSSVGRRLANVLGLPFRDADNEVEAAAGRSI 74

Query: 68  PEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAISIWLKADS 127
            EIF   GEP FRDGE RVIAR+L   P VLATGGGAF+  ETR  I ++A+S+WLKAD 
Sbjct: 75  SEIFAELGEPAFRDGERRVIARLLDEPPHVLATGGGAFVNAETRALINEKAVSVWLKADV 134

Query: 128 DIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRIVDECLEA 187
           +++ RRV R+ +RPL+   DP   +  L   R P Y  A + + + D PH   V+  L A
Sbjct: 135 ELLARRVSRKDNRPLVRGKDPVKVLTELAEARYPAYAEAQVHVETGDTPHMVAVEAILTA 194

Query: 188 L-HAH 191
           L  AH
Sbjct: 195 LRQAH 199


>SMc00695 [E] COG0703 Shikimate kinase Sme Sinorhizobium meliloti
          Length = 192

 Score =  168 bits (426), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 2/191 (1%)

Query: 1   MSDAAVPAPTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIE 60
           M+D  V  P   TL       LG R++V +G+MGAGKS IGR  A  L +PF D+D EIE
Sbjct: 1   MND--VTEPVSATLAERAKRTLGKRNLVFIGLMGAGKSAIGRLTAQALGVPFVDSDHEIE 58

Query: 61  AAADMTIPEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAIS 120
             + MT+ ++F + GE  FR  EARV+ R+L +GP V++TGGGA++ E +R  I+   ++
Sbjct: 59  RVSRMTVSDLFATYGEEEFRALEARVLKRLLRSGPRVVSTGGGAYINERSRRHIKKGGLT 118

Query: 121 IWLKADSDIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRI 180
           IWL A+ D++  RV +R  RPLL T +P+ T+  L+  R P+Y  ADLT+ SRDV  + +
Sbjct: 119 IWLNAELDVLWERVNKRDTRPLLKTENPKQTLENLMRARYPIYAEADLTVLSRDVKKEAM 178

Query: 181 VDECLEALHAH 191
           V+E L A+  H
Sbjct: 179 VEEVLAAVADH 189


>AGl2400 [E] COG0703 Shikimate kinase Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 166

 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 109/159 (68%)

Query: 30  VGMMGAGKSTIGRRVAARLKLPFTDADTEIEAAADMTIPEIFESKGEPYFRDGEARVIAR 89
           +G+MGAGKS +GR VA +LK+PF D D EIE  + MTI E+F + GE  FR  E RVI R
Sbjct: 1   MGLMGAGKSAVGRMVAQQLKVPFIDTDVEIERVSRMTISELFATYGEEEFRALETRVIKR 60

Query: 90  ILGNGPVVLATGGGAFMREETRNRIRDRAISIWLKADSDIIMRRVRRRADRPLLHTPDPE 149
           ++  GP V++TGGGAF+ + TR  IR   IS+WLKAD +++  RV +R  RPLL T +P+
Sbjct: 61  LMRGGPKVVSTGGGAFINDTTRGHIRRGGISLWLKADLEVLWERVNKRDHRPLLKTENPK 120

Query: 150 ATVNRLLSEREPVYRTADLTIASRDVPHDRIVDECLEAL 188
           AT+  L+ +R P+Y  AD+TI SRDV  + I  E L AL
Sbjct: 121 ATLAALMEKRYPIYAEADVTIESRDVRKEIIATEVLTAL 159