BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0201.p (204 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00342 [J] COG0349 Ribonuclease D Sme Sinorhizobium meliloti 296 3e-80 mll3296 [J] COG0349 Ribonuclease D Mlo Mesorhizobium loti 292 3e-79 BMEI1828 [J] COG0349 Ribonuclease D Bme Brucella melitensis 288 6e-78 AGl1490 [J] COG0349 Ribonuclease D Atu Agrobacterium tumefaciens... 282 3e-76 CC3603 [J] COG0349 Ribonuclease D Ccr Caulobacter vibrioides 264 8e-71 >SMc00342 [J] COG0349 Ribonuclease D Sme Sinorhizobium meliloti Length = 217 Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 140/205 (68%), Positives = 169/205 (82%), Gaps = 2/205 (0%) Query: 2 TIRLHRGDLP--DLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTD 59 TIR H GD+ D +RYT ++AIDTET+GL P RDRLCVVQ+S+GDGTADVI+I G Sbjct: 13 TIRFHEGDISETDAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRISAGQKQ 72 Query: 60 SPNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDL 119 +PNL ++LA+P KIFHF RFD+AVL++TFGV +PV+CTKIASRL+RTYTDRHGLKD Sbjct: 73 APNLVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDN 132 Query: 120 VREVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQA 179 ++E+L++++SKQQQSSDW A LS AQL YAASDVLHLHALRDKL L R+GR +LA+A Sbjct: 133 LKELLDIDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAEA 192 Query: 180 CFDFLPTRARLDLDGWEAEDIFAHS 204 CF FLPTRA+LDL GWE DIFAHS Sbjct: 193 CFSFLPTRAKLDLLGWEEADIFAHS 217 >mll3296 [J] COG0349 Ribonuclease D Mlo Mesorhizobium loti Length = 206 Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 143/203 (70%), Positives = 164/203 (80%), Gaps = 1/203 (0%) Query: 3 IRLHRGDLPDLSRY-TDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDSP 61 IR H+ DLPDLS Y +VAIDTET+GL+PHRDRLC+VQ+S GDG+ADVIQI G +P Sbjct: 4 IRFHKHDLPDLSHYNVGAVAIDTETLGLNPHRDRLCLVQISPGDGSADVIQIAPGQKKAP 63 Query: 62 NLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLVR 121 NL +LL N +TK+FHF RFD+AVLYN FGVMP PV+CTKIASRL+RTYTDRHGLKD+ Sbjct: 64 NLVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLKDICF 123 Query: 122 EVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQACF 181 E+L V LSK QQSSDW A++LS QL YAASDVL+LH LRD L LAREGRT A ACF Sbjct: 124 ELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEADACF 183 Query: 182 DFLPTRARLDLDGWEAEDIFAHS 204 FLPTRA+LDL GW+ EDIFAHS Sbjct: 184 RFLPTRAKLDLMGWDEEDIFAHS 206 >BMEI1828 [J] COG0349 Ribonuclease D Bme Brucella melitensis Length = 205 Score = 288 bits (737), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 138/205 (67%), Positives = 162/205 (79%), Gaps = 1/205 (0%) Query: 1 MTIRLHRGDLPDLSRY-TDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTD 59 MTIR HR DLP+L Y D+VAIDTET+GL+PHRDRLCVVQ+S GDGTADVIQI G Sbjct: 1 MTIRFHRNDLPNLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 60 SPNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDL 119 +PNL LL + ITKIFHF RFD+AVL + FG MP PV+CTKIAS+L+RTYTDRHGLK++ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 120 VREVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQA 179 E+L+V +SKQQQSSDW A+ LS+AQL YAASDVL+LH L+ L L R+GRT A+A Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 180 CFDFLPTRARLDLDGWEAEDIFAHS 204 CF FLPTR+ LDL GW DIFAHS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >AGl1490 [J] COG0349 Ribonuclease D Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 208 Score = 282 bits (722), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/205 (66%), Positives = 164/205 (80%), Gaps = 2/205 (0%) Query: 2 TIRLHRGDLP--DLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTD 59 TIR H GD+ D +RY ++AIDTET+GL P RDRLCVVQ+S+GDGTADVI+I G Sbjct: 4 TIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQ 63 Query: 60 SPNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDL 119 +PNL +LA+P KIFH+ RFD+AVL++TFGV TPV+CTKIASRL RTYTDRHGLKD Sbjct: 64 APNLVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDN 123 Query: 120 VREVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQA 179 ++E+L V++SK QQSSDW A++LS AQL YAASDVL+LHALRDKL L R+GR + A A Sbjct: 124 LKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRIEHADA 183 Query: 180 CFDFLPTRARLDLDGWEAEDIFAHS 204 CF FLPTRA+LDL GW+ DIFAHS Sbjct: 184 CFAFLPTRAKLDLLGWDETDIFAHS 208 >CC3603 [J] COG0349 Ribonuclease D Ccr Caulobacter vibrioides Length = 205 Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 155/206 (75%), Gaps = 3/206 (1%) Query: 1 MTIRLHRGDLPDLSRYTDS--VAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHT 58 M +H GDLPD + D+ +AID+ETMGL RD LCVVQ+S GDG A V+++ + Sbjct: 1 MANFVHEGDLPD-GVFADAEIIAIDSETMGLRLRRDPLCVVQLSAGDGDAHVVRLSRPDY 59 Query: 59 DSPNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKD 118 D PNLKALL NPK+ K+FHF RFD+A+ GV+ PVYCTKIAS+L+RTYTDRHGLKD Sbjct: 60 DCPNLKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLKD 119 Query: 119 LVREVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQ 178 + RE+L VELSK QQSSDWGA SLS Q+AYAASDVLHLH LR KLN ML REGR LAQ Sbjct: 120 VTRELLGVELSKVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALAQ 179 Query: 179 ACFDFLPTRARLDLDGWEAEDIFAHS 204 FD+LP RA LDL GWE DIFAHS Sbjct: 180 HAFDYLPHRASLDLAGWEEMDIFAHS 205