BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0195.p (199 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc579 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Atu Ag... 171 9e-43 SMc01140 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Sme ... 164 9e-41 BMEI1787 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Bme ... 156 2e-38 CC3597 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Ccr Ca... 147 1e-35 mll3195 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Mlo M... 140 3e-33 >AGc579 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 210 Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 120/194 (61%), Gaps = 11/194 (5%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 M++R+SGK + IGE+ R R+ + + KYFDG YSG +T+ K G F DC LHLD+G Sbjct: 21 MSVRVSGKHMEIGESFRQRIEDNIGLAVTKYFDGGYSGQVTVEKSGSRFAADCKLHLDTG 80 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 + L A A D AS DAA IEKRLRRYK +LKD + + AL E+ +DA Sbjct: 81 VVLHAAGQANDPQASFDAAAERIEKRLRRYKRKLKDHHS----GSNGALPEIAYTVMDA- 135 Query: 121 SYVIEAPENEDEVTE-YSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRLN 179 P+ + EV E Y+P I+AE++ +K +SV+ AVM LD+T L+F+ G LN Sbjct: 136 -----VPDEDHEVPEDYAPTIVAESSKQIKTMSVASAVMALDMTDEPVLLFRSPGKEYLN 190 Query: 180 IIYRRTDGNVGWVD 193 I+YRR DGN+GW+D Sbjct: 191 IVYRRHDGNIGWID 204 >SMc01140 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Sme Sinorhizobium meliloti Length = 190 Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 80/193 (41%), Positives = 119/193 (61%), Gaps = 9/193 (4%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 M++R+SGK + IG++ R R+ E+ ++ + KYFDG YS +T+ K G F DC LHLD+G Sbjct: 1 MSVRVSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSADCKLHLDTG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 + L+A A + ++ DAA IEKRLRRYK +LKD +T + +D+ Sbjct: 61 VVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDHHNGNGQNSTEVAYRV----MDSV 116 Query: 121 SYVIEAPENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRLNI 180 + E+E+ +Y+P I+AE T L+ +SV+ AVM LD+T L+F+ G LNI Sbjct: 117 PF-----EDEEVPDDYAPTIVAETTKQLRTMSVANAVMALDMTDEPVLMFRSPGKDDLNI 171 Query: 181 IYRRTDGNVGWVD 193 +YRR DGN+GW+D Sbjct: 172 VYRRNDGNIGWID 184 >BMEI1787 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Bme Brucella melitensis Length = 197 Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 14/201 (6%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MTLR+SGK + +GEA +R+ +R ++ + KYFD +SG +T++K G F DC LHLDSG Sbjct: 1 MTLRVSGKHMDVGEAFTSRIVDRVNDAVDKYFDHGFSGQVTVAKSGSRFSADCTLHLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 TL++ A D + D A IE RLRRYK RLK R A A+ N + D Sbjct: 61 ATLQSAGEAQDPQLAFDMAADKIETRLRRYKRRLKSR----------APAQQNAI-YDDV 109 Query: 121 SYVIEAP---ENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGR 177 +Y + AP E ED +Y+P I+AE++ AL+ +SV+ AV+ELDLT LVF++ G+ Sbjct: 110 AYRVMAPLPEEEEDLPADYAPTIVAESSVALRTMSVASAVVELDLTEHPVLVFRNAGNDE 169 Query: 178 LNIIYRRTDGNVGWVDPPAVS 198 +NI+YRR DGN+GWVDP V+ Sbjct: 170 VNIVYRRADGNIGWVDPSTVT 190 >CC3597 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Ccr Caulobacter vibrioides Length = 208 Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 128/205 (62%), Gaps = 21/205 (10%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 M +++SGK + +GEALRARVS+ + KYFD + + +SK+G+ FR DC++ L SG Sbjct: 1 MQVQVSGKHVDVGEALRARVSDEIALSIGKYFDRGGAAEVVVSKEGYAFRVDCSVKLASG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 L + + DA+A+ DAAL I+ R+RRYK RLK SA AATA E +A Sbjct: 61 QQLISHGSGGDAHAAFDAALAKIDTRIRRYKRRLKSHSA----AATAKQVE------NAA 110 Query: 121 SYVIEAPENED-----EVTEYSP------VIIAEATTALKRLSVSEAVMELDLTGASCLV 169 +V+ APE++D ++ + P ++IAE A+K ++VS AVMELDLT +V Sbjct: 111 MFVLRAPESDDVDEDWDIEDDHPTGAPAAMVIAETQAAMKTMTVSMAVMELDLTAYPAIV 170 Query: 170 FQHGGSGRLNIIYRRTDGNVGWVDP 194 F++ G ++++YRR DGN+GW+DP Sbjct: 171 FRNAAHGGISVVYRRPDGNIGWIDP 195 >mll3195 [J] COG1544 Ribosome-associated protein Y (PSrp-1) Mlo Mesorhizobium loti Length = 194 Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 125/198 (63%), Gaps = 16/198 (8%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 M LRISGK + IG+A R R+++R E + KYFD ++GH+T+ K G + DC + LDSG Sbjct: 1 MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVG-LDA 119 +L+A +A D + +AA +E RLRRYK RLK ++ NG G L Sbjct: 61 ASLQATGDAQDPTLAFEAAADRLETRLRRYKRRLKSHNSG------------NGNGDLTD 108 Query: 120 PSYVIEAP--ENEDEVTE-YSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSG 176 +Y + AP ++++E+ E ++P I+AE+T LK +SV+ AV+ELD + VF++ G+ Sbjct: 109 IAYTVMAPLADDDEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVFVFRNAGTD 168 Query: 177 RLNIIYRRTDGNVGWVDP 194 LNI+YRR DGN+GW+DP Sbjct: 169 HLNIVYRRPDGNIGWIDP 186