BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0174.p         (66 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01160 [K] COG1959 Predicted transcriptional regulator Sme Sin...    68   6e-12
PA4169 [K] COG1959 Predicted transcriptional regulator Pae Pseud...    64   8e-11

>SMc01160 [K] COG1959 Predicted transcriptional regulator Sme Sinorhizobium
           meliloti
          Length = 152

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query: 1   MGHRSENPGCLVEQAVNDALGDAFREVEALFLKRLGAVTLDALARDFKRRLAKHKQSLED 60
           +G+R+E PGC+VEQAVN A+  A R+ EAL ++RL  ++L  L+ DF+RR+A  +Q +++
Sbjct: 88  IGNRTEAPGCVVEQAVNAAMDGALRDAEALLMQRLERISLADLSNDFQRRIAIRRQQMKE 147

Query: 61  QIH 63
           Q H
Sbjct: 148 QNH 150


>PA4169 [K] COG1959 Predicted transcriptional regulator Pae Pseudomonas
           aeruginosa
          Length = 142

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 1   MGHRSENPGCLVEQAVNDALGDAFREVEALFLKRLGAVTLDALARDFKRR 50
           +G  +++P CLVEQAVN+ALG+AF   +AL L+RLG+VTL+ LA +F+RR
Sbjct: 89  IGLSTDHPECLVEQAVNEALGEAFEAAQALLLERLGSVTLEQLASEFERR 138