BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0171.p (576 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF1297 [O] COG0464 ATPases of the AAA+ class Afu Archaeoglobus f... 108 5e-23 MJ1176 [O] COG1222 ATP-dependent 26S proteasome regulatory subun... 104 7e-22 all2243 [O] COG0464 ATPases of the AAA+ class Nos Nostoc sp. PCC... 104 7e-22 alr1261 [O] COG0465 ATP-dependent Zn proteases Nos Nostoc sp. PC... 103 8e-22 PAB2086 [O] COG0464 ATPases of the AAA+ class Pab Pyrococcus abyssi 103 8e-22 >AF1297 [O] COG0464 ATPases of the AAA+ class Afu Archaeoglobus fulgidus Length = 733 Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 137/249 (55%), Gaps = 11/249 (4%) Query: 318 LPTVARDDVILPDRTLRLLDRNVLGFVESRDLLRGLGQSTRKGILLYGPPGTGKTHTIRY 377 +P V +D+ R LRL+ + ++ +L + LG KG+LLYGPPGTGKT + Sbjct: 176 VPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKA 235 Query: 378 LATNLPDHTTLI----ITAEQVG----LLGAYMNLARLLQPTMVVIEDVDLIARDREDMG 429 +A + H I I ++ G L A+ P+++ I+++D IA RE++ Sbjct: 236 VANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVT 295 Query: 430 GPCEESLLNKLLNEMDGLKEDCDILFVLTSNRPEELESALAGRPGRIDQAIEVPLPDETG 489 G E ++ +LL MDGL+ D++ + +NRP+ ++ AL RPGR D+ IE+ +PD+ G Sbjct: 296 GEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALR-RPGRFDREIEIGVPDKEG 354 Query: 490 RSKLIRLYGKGLPLEQPI-VDEAVQRTAGVSAAFIKELMRRIAQASIAREGGQ-DVTADD 547 R +++ ++ + +PL + + ++E + T G A ++ L + A ++ R + D+ A++ Sbjct: 355 RKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVLPEIDIEAEE 414 Query: 548 IDGALNEML 556 I + E L Sbjct: 415 IPAEVIENL 423 Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 109/201 (54%), Gaps = 17/201 (8%) Query: 348 DLLRGLGQSTRKGILLYGPPGTGKTHTIRYLATNLPDHTTLIITAEQVGLLGAYM----- 402 ++ R +GILL+GPPGTGKT + +A + I+ + LL ++ Sbjct: 479 EVFRAANIKPPRGILLFGPPGTGKTLLAKAVAN---ESNANFISVKGPELLSKWVGESEK 535 Query: 403 ------NLARLLQPTMVVIEDVDLIARDREDMGGP-CEESLLNKLLNEMDGLKEDCDILF 455 AR + P ++ +++D +A R +G E ++++LL E+DGL+E D++ Sbjct: 536 HVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEELKDVVV 595 Query: 456 VLTSNRPEELESALAGRPGRIDQAIEVPLPDETGRSKLIRLYGKGLPLEQPI-VDEAVQR 514 + +NRP+ ++ AL RPGR+++ I +P PD+ R ++ +++ +G PL + ++E ++ Sbjct: 596 IAATNRPDMIDPALL-RPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEK 654 Query: 515 TAGVSAAFIKELMRRIAQASI 535 T G S A I+ + R +I Sbjct: 655 TEGYSGADIEAVCREAGMLAI 675 >MJ1176 [O] COG1222 ATP-dependent 26S proteasome regulatory subunit Mja Methanococcus jannaschii Length = 430 Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 14/264 (5%) Query: 305 NYRGRSRGLTVHRLPTVARDDVILPDRTLRLLDRNVLGFVESRDLLRGLGQSTRKGILLY 364 N R++ + V P V +D+ ++ ++ + V ++ +L +G KGILLY Sbjct: 151 NKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLY 210 Query: 365 GPPGTGKTHTIRYLATNLPDHTTLIITAEQV--------GLLGAYMNLARLLQPTMVVIE 416 GPPGTGKT + +AT ++ +E V L+ LA+ P+++ I+ Sbjct: 211 GPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFID 270 Query: 417 DVDLIARDRED--MGGPCE-ESLLNKLLNEMDGLKEDCDILFVLTSNRPEELESALAGRP 473 ++D IA R D GG E + L +LL EMDG D+ + +NRP+ L+ A+ RP Sbjct: 271 EIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL-RP 329 Query: 474 GRIDQAIEVPLPDETGRSKLIRLYGKGLPLEQPI-VDEAVQRTAGVSAAFIKELMRRIAQ 532 GR D+ IEVP PDE GR ++++++ + + L + + ++E + T G A +K + Sbjct: 330 GRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGM 389 Query: 533 ASIAREGGQDVTADDIDGALNEML 556 +I RE VT DD A+ +++ Sbjct: 390 NAI-RELRDYVTMDDFRKAVEKIM 412 >all2243 [O] COG0464 ATPases of the AAA+ class Nos Nostoc sp. PCC 7120 Length = 613 Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 111/201 (55%), Gaps = 12/201 (5%) Query: 348 DLLRGLGQSTRKGILLYGPPGTGKTHTIRYLATNLPDHTTLIITAEQVG---------LL 398 DLL LG +G+LL GPPGTGKT T R LA L + ++ E + L Sbjct: 117 DLLAKLGLEPTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLR 176 Query: 399 GAYMNLARLLQPTMVVIEDVDLIARDREDMGGPCEESLLNKLLNEMDGLKEDCDILFVLT 458 G + A+ P ++ I+++D +A DR + G E+ L+ +LL+ MDG ++ + Sbjct: 177 GIFEKAAKN-APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSHSQGVIVLAA 235 Query: 459 SNRPEELESALAGRPGRIDQAIEVPLPDETGRSKLIRLYGKGLPLEQPI-VDEAVQRTAG 517 +NRP+ L+ AL RPGR D+ ++ +PD GR ++++ + +PLE+ + +D +R+ G Sbjct: 236 TNRPDHLDPALR-RPGRFDREVQFRVPDVKGRRDILQILTRAMPLEETVDLDAIAERSVG 294 Query: 518 VSAAFIKELMRRIAQASIARE 538 A +K L ++ A ++ R+ Sbjct: 295 FVGADLKALCQKAAYTALRRQ 315 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 13/238 (5%) Query: 318 LPTVARDDVILPDRTLRLLDRNVLGFVESRDLLRGLGQSTRKGILLYGPPGTGKTHTIR- 376 +P +A DD+ D + L +V G + +L KGILL+GPPGTGKT + Sbjct: 353 VPHIAWDDIGGLDTIKQTLRESVEGALLYPELYLQTKALAPKGILLWGPPGTGKTLLAKA 412 Query: 377 --------YLATNLPDHTTLIITAEQVGLLGAYMNLARLLQPTMVVIEDVDLIARDREDM 428 ++ N P+ + + A + + + AR +P +V I+++D +A R Sbjct: 413 VASQARANFIGVNGPELLSRWVGASEQAVRELFAK-ARQAEPCVVFIDEIDTLAPARGSF 471 Query: 429 GGP--CEESLLNKLLNEMDGLKEDCDILFVLTSNRPEELESALAGRPGRIDQAIEVPLPD 486 G + ++ +LL E+DG++ IL + +NRP+ L+ AL R GR+D ++V LPD Sbjct: 472 SGDSGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL-RAGRLDLQMKVDLPD 530 Query: 487 ETGRSKLIRLYGKGLPLEQPIVDEAVQRTAGVSAAFIKELMRRIAQASIAREGGQDVT 544 R ++ ++ +G PL+ + + T + A + L + A +I R Q +T Sbjct: 531 LASRLAILLVHSQGRPLDGVDFNYWAEMTQDWNGADLTLLCNQAAVEAIRRFRSQGLT 588 >alr1261 [O] COG0465 ATP-dependent Zn proteases Nos Nostoc sp. PCC 7120 Length = 613 Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 14/229 (6%) Query: 340 VLGFVESRDLLRGLGQSTRKGILLYGPPGTGKTHTIRYLATNLPDHTTLIITAEQVGL-- 397 V+ F+++ D +G KG+LL GPPGTGKT R +A I +E V + Sbjct: 173 VVDFLKNADRFTAVGAKIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFV 232 Query: 398 -LGA-----YMNLARLLQPTMVVIEDVDLIARDR-EDMGGPCE--ESLLNKLLNEMDGLK 448 +GA A+ P +V I+++D + R R +GG + E LN+LL EMDG + Sbjct: 233 GVGASRVRDLFEQAKSNAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFE 292 Query: 449 EDCDILFVLTSNRPEELESALAGRPGRIDQAIEVPLPDETGRSKLIRLYGKGLPLEQPI- 507 + I+ + +NRP+ L++AL RPGR D+ + V PD GRS++++++ +G L + + Sbjct: 293 GNTGIIIIAATNRPDVLDAALL-RPGRFDRQVVVDRPDYAGRSEILKVHARGKTLAKDVD 351 Query: 508 VDEAVQRTAGVSAAFIKELMRRIAQASIAREGGQDVTADDIDGALNEML 556 +D+ +RT G + A + L+ A + AR +++ D+I+ A++ +L Sbjct: 352 LDKIARRTPGFTGADLSNLLNEAAILA-ARRNLTEISMDEINDAIDRVL 399 >PAB2086 [O] COG0464 ATPases of the AAA+ class Pab Pyrococcus abyssi Length = 795 Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 10/197 (5%) Query: 350 LRGLGQSTRKGILLYGPPGTGKTHTIRYLATNLPDHTTLI----ITAEQVGL----LGAY 401 + G + KGILLYGPPGTGKT + +AT + + I ++ VG + Sbjct: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601 Query: 402 MNLARLLQPTMVVIEDVDLIARDREDMGGPCEESLLNKLLNEMDGLKEDCDILFVLTSNR 461 AR PT++ I+++D IA R + ++N+LL EMDG++E+ ++ + +NR Sbjct: 602 FRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNR 661 Query: 462 PEELESALAGRPGRIDQAIEVPLPDETGRSKLIRLYGKGLPLEQPI-VDEAVQRTAGVSA 520 P+ L+ AL RPGR D+ I VP PDE R ++ +++ +G+PL + + E +RT G + Sbjct: 662 PDILDPALL-RPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 720 Query: 521 AFIKELMRRIAQASIAR 537 A I + R A ++ R Sbjct: 721 ADIAAVCREAAMIAMRR 737 Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 348 DLLRGLGQSTRKGILLYGPPGTGKTHTIR---------YLATNLPDHTTLIITAEQVGLL 398 +L LG KG+LLYGPPGTGKT + ++A N P+ + + L Sbjct: 206 ELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLR 265 Query: 399 GAYMNLARLLQPTMVVIEDVDLIARDREDMGGPCEESLLNKLLNEMDGLKEDCDILFVLT 458 + A P ++ I+++D IA R ++ G E+ ++ +LL MDGLK ++ + Sbjct: 266 EVFKE-AEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324 Query: 459 SNRPEELESALAGRPGRIDQAIEVPLPDETGRSKLIRLYGKGLPLE 504 +NRP+ ++ AL RPGR D+ IEV +PD GR ++++++ +G+P+E Sbjct: 325 TNRPDAIDPALR-RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIE 369