BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0147.p         (102 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr3552 [J] COG0227 Ribosomal protein L28 Mlo Mesorhizobium loti      125   2e-29
SMc00704 [J] COG0227 Ribosomal protein L28 Sme Sinorhizobium mel...   119   1e-27
BMEI0056 [J] COG0227 Ribosomal protein L28 Bme Brucella melitensis    116   1e-26
CC0661 [J] COG0227 Ribosomal protein L28 Ccr Caulobacter vibrioides   109   1e-24
RC0136 [J] COG0227 Ribosomal protein L28 Rco Rickettsia conorii        84   8e-17

>mlr3552 [J] COG0227 Ribosomal protein L28 Mlo Mesorhizobium loti
          Length = 98

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 73/95 (76%)

Query: 1  MSRRCELTAKGPQTGHKVSHSNIKTKRRFLPNLANITFISEALGRNVRLRVSTNALKSVD 60
          MSR CELTAK  QTG+ VSH+N KTKRRFLPNL N+T ISEAL +NVRLR+S NAL+SV+
Sbjct: 1  MSRTCELTAKAVQTGNNVSHANNKTKRRFLPNLVNVTLISEALNQNVRLRISANALRSVE 60

Query: 61 HNGGLDAYLLKAKADVLSPRALELKRAIEKKVGKP 95
          H GGLDA+L KA    LS RA  LK+ I KK+ + 
Sbjct: 61 HRGGLDAFLAKADVKELSQRARLLKKQIAKKLAEQ 95


>SMc00704 [J] COG0227 Ribosomal protein L28 Sme Sinorhizobium meliloti
          Length = 96

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 73/96 (76%)

Query: 1  MSRRCELTAKGPQTGHKVSHSNIKTKRRFLPNLANITFISEALGRNVRLRVSTNALKSVD 60
          MSR CELT KG Q+G+ VSH+N KTKR+FLPNL N+T IS+ALG+  RLRVS  AL+SV+
Sbjct: 1  MSRSCELTGKGVQSGNNVSHANNKTKRKFLPNLCNVTLISDALGQRFRLRVSAAALRSVE 60

Query: 61 HNGGLDAYLLKAKADVLSPRALELKRAIEKKVGKPA 96
          H GGLDA+LLKA  + LS RA  L+R I KK  + A
Sbjct: 61 HRGGLDAFLLKADENELSMRARLLRRQIVKKAAEAA 96


>BMEI0056 [J] COG0227 Ribosomal protein L28 Bme Brucella melitensis
          Length = 97

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 71/97 (73%)

Query: 1  MSRRCELTAKGPQTGHKVSHSNIKTKRRFLPNLANITFISEALGRNVRLRVSTNALKSVD 60
          MSR CELT K  Q G+ VSH+N +T+RRFLPNL N+T ISE LG++ RLR+S NAL+SV+
Sbjct: 1  MSRACELTGKSVQYGNNVSHANNRTRRRFLPNLCNVTLISETLGQSYRLRISANALRSVE 60

Query: 61 HNGGLDAYLLKAKADVLSPRALELKRAIEKKVGKPAP 97
          H GGLDA+L+K+    LS RA  LKR I KK  + A 
Sbjct: 61 HRGGLDAFLVKSDDKELSQRARLLKRQIAKKQAEAAA 97


>CC0661 [J] COG0227 Ribosomal protein L28 Ccr Caulobacter vibrioides
          Length = 99

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 65/84 (77%)

Query: 1  MSRRCELTAKGPQTGHKVSHSNIKTKRRFLPNLANITFISEALGRNVRLRVSTNALKSVD 60
          MSRRCELT  GP  GH VSHSNIKTKRRFLP L+  T  SE+LG++ +LR+S  AL+++D
Sbjct: 1  MSRRCELTGIGPMVGHNVSHSNIKTKRRFLPALSPATLQSESLGQSFKLRISNAALRTLD 60

Query: 61 HNGGLDAYLLKAKADVLSPRALEL 84
            GGLD +LL AK + LSPRAL++
Sbjct: 61 FKGGLDTFLLGAKDEQLSPRALKI 84


>RC0136 [J] COG0227 Ribosomal protein L28 Rco Rickettsia conorii
          Length = 97

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 1  MSRRCELTAKGPQTGHKVSHSNIKTKRRFLPNLANITFISEALGRNVRLRVSTNALKSVD 60
          MSR+CELT  G   G+ VSHS  KT+RRF PNL ++ F S+      RL V+   + SV+
Sbjct: 1  MSRKCELTGVGVLYGNNVSHSQRKTRRRFEPNLRSVKFTSDITAGEYRLSVNARCISSVE 60

Query: 61 HNGGLDAYLLKAKADVLSPRALELKRAIEKKV 92
            GG DAY+LKA  +VLS  A    RAI+KK+
Sbjct: 61 KAGGFDAYILKADDNVLSSNA----RAIKKKI 88