BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0118.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21379 [S] COG2343 Uncharacterized protein conserved in bacter...   152   1e-37
Rv0140 [S] COG2343 Uncharacterized protein conserved in bacteria...   134   3e-32
MT0148 [S] COG2343 Uncharacterized protein conserved in bacteria...   134   3e-32
RSc0235 [S] COG2343 Uncharacterized protein conserved in bacteri...   122   2e-28
mll7534 Non COG                                                       110   7e-25

>SMb21379 [S] COG2343 Uncharacterized protein conserved in bacteria Sme
           Sinorhizobium meliloti
          Length = 124

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 88/118 (74%), Gaps = 1/118 (0%)

Query: 1   MKLPGPDHPITITPNAKRVRVTADGVVIAETTHALTLKEASYPAVQYVPRQDANMELLTR 60
           +++PGPDHPIT+  N  RV V  DG V+A+T  ALTL+EASYP VQYVPR D +M LL R
Sbjct: 6   IRIPGPDHPITVERNPGRVVVKLDGRVVADTRDALTLREASYPPVQYVPRNDVDMSLLAR 65

Query: 61  TERTTHCPYKGDASYFSIKANGKTLDNAIWTYEEPFPAMTEIAGHLAFYPDKV-KIEE 117
           T+  T+CPYKGDASY+SI A G+   NA+WTYE P  A+ EI  H+AFYPD+V  IEE
Sbjct: 66  TDHGTYCPYKGDASYYSIAAGGERSKNAVWTYENPHDAVREIKDHMAFYPDRVDSIEE 123


>Rv0140 [S] COG2343 Uncharacterized protein conserved in bacteria Mtu
           Mycobacterium tuberculosis H37Rv
          Length = 126

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 4   PGPDHPITITPNAKRVRVTADGVVIAETTHALTLKEASYPAVQYVPRQDANMELLTRTER 63
           P  DHPITI P  +RV+V  +G V+A+T  AL L+EASYPAVQY+P  D   + L RTE 
Sbjct: 9   PSADHPITIEPTNRRVQVRVNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTET 68

Query: 64  TTHCPYKGDASYFSIKAN-GKTLDNAIWTYEEPFPAMTEIAGHLAFYPDKVKI 115
           +T+CP+KG+ASY+S+  + G  +D+ +WTYE P+PA+  IAGH+A YPDK +I
Sbjct: 69  STYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEI 121


>MT0148 [S] COG2343 Uncharacterized protein conserved in bacteria MtC
           Mycobacterium tuberculosis CDC1551
          Length = 126

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 4   PGPDHPITITPNAKRVRVTADGVVIAETTHALTLKEASYPAVQYVPRQDANMELLTRTER 63
           P  DHPITI P  +RV+V  +G V+A+T  AL L+EASYPAVQY+P  D   + L RTE 
Sbjct: 9   PSADHPITIEPTNRRVQVRVNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTET 68

Query: 64  TTHCPYKGDASYFSIKAN-GKTLDNAIWTYEEPFPAMTEIAGHLAFYPDKVKI 115
           +T+CP+KG+ASY+S+  + G  +D+ +WTYE P+PA+  IAGH+A YPDK +I
Sbjct: 69  STYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEI 121


>RSc0235 [S] COG2343 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 118

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 72/112 (64%)

Query: 6   PDHPITITPNAKRVRVTADGVVIAETTHALTLKEASYPAVQYVPRQDANMELLTRTERTT 65
           P+HPIT+ PN +RV V  +G  IA+T  A TL+EAS   VQY+PR D  M  L RT   T
Sbjct: 6   PNHPITVAPNPRRVTVVFNGYTIADTRQARTLREASLAPVQYIPRDDVQMNHLERTHHHT 65

Query: 66  HCPYKGDASYFSIKANGKTLDNAIWTYEEPFPAMTEIAGHLAFYPDKVKIEE 117
           HCPYKGDA+Y++I       +NA+WTYE   P   E+   LAFYP++V I E
Sbjct: 66  HCPYKGDAAYYTIVTGDTRAENAVWTYEHALPVAREVERFLAFYPNQVTITE 117


>mll7534 Non COG
          Length = 129

 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 68/111 (61%)

Query: 6   PDHPITITPNAKRVRVTADGVVIAETTHALTLKEASYPAVQYVPRQDANMELLTRTERTT 65
           PD  ITI P A  V V A   VIA +T A  L EA YP   Y+P  D + + L+ T+ +T
Sbjct: 15  PDKIITIEPYAGTVTVRAGDTVIASSTKAKVLGEAPYPPAFYIPFADIDFDKLSSTQHST 74

Query: 66  HCPYKGDASYFSIKANGKTLDNAIWTYEEPFPAMTEIAGHLAFYPDKVKIE 116
           HCPYKGDASY+S+   G+   NA+W YE PF  MTEI  H AFY  KV IE
Sbjct: 75  HCPYKGDASYWSVLPAGEAGQNAMWAYERPFDEMTEIRDHGAFYASKVTIE 125