BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0110.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1858gl [K] COG0789 Predicted transcriptional regulators Atu A...   181   4e-46
SMc00182 [K] COG0789 Predicted transcriptional regulators Sme Si...   179   2e-45
PA2273 [K] COG0789 Predicted transcriptional regulators Pae Pseu...   166   1e-41
soxR [K] COG0789 Predicted transcriptional regulators Eco Escher...   163   1e-40
ZsoxR [K] COG0789 Predicted transcriptional regulators EcZ Esche...   163   1e-40

>AGl1858gl [K] COG0789 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 177

 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 106/145 (73%)

Query: 3   LAQELSVGEVARRSGLAVSTLHFYESKGLIASRRTGGNQRRYMRGVLRRIAVIRIAQRAG 62
               LSVG+VARRSG+AVST+HFYE+KGLI   RT GNQRRY R VLRRIA+IRIAQRAG
Sbjct: 32  FKHSLSVGDVARRSGIAVSTIHFYEAKGLIEGWRTAGNQRRYHRAVLRRIAIIRIAQRAG 91

Query: 63  IPLDEIRQTFAAIPLDRAPTVREWERAMRAWTETLEQRINDLTDLRDKLFNCIGCGCLSV 122
           I L  IR+  A +P DR  T  +W R  ++W E L+ RIN+L  LRD+L  CIGCGCLS+
Sbjct: 92  IQLSIIREAMADLPQDRVATTTDWRRFSQSWREMLQTRINNLVMLRDQLTGCIGCGCLSL 151

Query: 123 TDCPLRNCDDKLGAQGPGPRILITA 147
            DCPLRN +D L   G GPR L++A
Sbjct: 152 DDCPLRNPNDVLADDGAGPRRLVSA 176


>SMc00182 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 161

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 110/145 (75%)

Query: 3   LAQELSVGEVARRSGLAVSTLHFYESKGLIASRRTGGNQRRYMRGVLRRIAVIRIAQRAG 62
           + +EL+VGEVA RSGLAVSTLHFYE+KGLI S R+ GNQRRY R VLRR+AVI++AQR G
Sbjct: 9   IKRELTVGEVAERSGLAVSTLHFYEAKGLIRSNRSRGNQRRYPRSVLRRVAVIKVAQRTG 68

Query: 63  IPLDEIRQTFAAIPLDRAPTVREWERAMRAWTETLEQRINDLTDLRDKLFNCIGCGCLSV 122
           IPL EI+   + +P DR  TV +W R  + W + L++RI +LT LRD+L  CIGCGCLS+
Sbjct: 69  IPLAEIQSALSVLPDDRPLTVEDWGRLSKTWRQQLDERIANLTALRDQLTGCIGCGCLSM 128

Query: 123 TDCPLRNCDDKLGAQGPGPRILITA 147
            DCPLRN  D L ++G GPR++  A
Sbjct: 129 RDCPLRNPWDVLASEGTGPRLIDPA 153


>PA2273 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 156

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 102/141 (72%)

Query: 4   AQELSVGEVARRSGLAVSTLHFYESKGLIASRRTGGNQRRYMRGVLRRIAVIRIAQRAGI 63
           ++ELSVGE+ARR+G+AVS LHFYE+KGLI+S+R  GNQRR+ R  LRR+ VI++AQR GI
Sbjct: 7   SRELSVGELARRAGVAVSALHFYETKGLISSQRNAGNQRRFSRETLRRVVVIKVAQRVGI 66

Query: 64  PLDEIRQTFAAIPLDRAPTVREWERAMRAWTETLEQRINDLTDLRDKLFNCIGCGCLSVT 123
           PL EI +    +P  R+P+  +W R    W E L +RI+ L  LRD+L  CIGCGCLS+ 
Sbjct: 67  PLAEIARALQTLPAGRSPSAADWARLSAQWKEDLTERIDKLLLLRDQLDGCIGCGCLSLQ 126

Query: 124 DCPLRNCDDKLGAQGPGPRIL 144
            CPLRN  D+L A+GPG   L
Sbjct: 127 ACPLRNPGDQLSAEGPGAHWL 147


>soxR [K] COG0789 Predicted transcriptional regulators Eco Escherichia
           coli K12
          Length = 154

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 99/138 (71%)

Query: 7   LSVGEVARRSGLAVSTLHFYESKGLIASRRTGGNQRRYMRGVLRRIAVIRIAQRAGIPLD 66
           L+ GEVA+RSG+AVS LHFYESKGLI S R  GNQRRY R VLR +A+I+IAQR GIPL 
Sbjct: 12  LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71

Query: 67  EIRQTFAAIPLDRAPTVREWERAMRAWTETLEQRINDLTDLRDKLFNCIGCGCLSVTDCP 126
            I + F  +P     + +EW++    W E L++RI+ L  LRD+L  CIGCGCLS +DCP
Sbjct: 72  TIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131

Query: 127 LRNCDDKLGAQGPGPRIL 144
           LRN  D+LG +G G R+L
Sbjct: 132 LRNPGDRLGEEGTGARLL 149


>ZsoxR [K] COG0789 Predicted transcriptional regulators EcZ Escherichia
           coli O157:H7 EDL933
          Length = 154

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 99/138 (71%)

Query: 7   LSVGEVARRSGLAVSTLHFYESKGLIASRRTGGNQRRYMRGVLRRIAVIRIAQRAGIPLD 66
           L+ GEVA+RSG+AVS LHFYESKGLI S R  GNQRRY R VLR +A+I+IAQR GIPL 
Sbjct: 12  LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71

Query: 67  EIRQTFAAIPLDRAPTVREWERAMRAWTETLEQRINDLTDLRDKLFNCIGCGCLSVTDCP 126
            I + F  +P     + +EW++    W E L++RI+ L  LRD+L  CIGCGCLS +DCP
Sbjct: 72  TIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131

Query: 127 LRNCDDKLGAQGPGPRIL 144
           LRN  D+LG +G G R+L
Sbjct: 132 LRNPGDRLGEEGTGARLL 149