BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0107.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2087 Non COG                                                        161   6e-40
CC3309 Non COG                                                         72   4e-13
PA0474 [Q] COG2050 Uncharacterized protein, possibly involved in...    62   4e-10

>CC2087 Non COG
          Length = 150

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 17  VETEGEFAGWRTWT-RDNFETHTGPFYHRMDENGRITCAFRVGKKHLNGSGNVHGGCFMT 75
           VET GE+AGWRTW   D FE  +GPFY R DE GR+TCAFR   KH+NG G +HGGC MT
Sbjct: 14  VET-GEWAGWRTWQGMDPFEDQSGPFYFREDETGRVTCAFRAEPKHMNGGGFMHGGCMMT 72

Query: 76  FADYCLFALAGSVLQGP-GVTVSFASEFLDAAREGDLIECTGEVTRAGMSLIFVRGMLTS 134
           FAD+CLFA+A   L G   VTVS   EF+  AR GDLI  TGEV RAG +L+FVRG++++
Sbjct: 73  FADFCLFAIAWRDLAGSHAVTVSLNGEFVGPARPGDLITATGEVVRAGGALLFVRGLIST 132

Query: 135 AERPLFSFSGTIKRVKRR 152
              P+ +FSG IKR++ R
Sbjct: 133 GSSPMLNFSGVIKRIRSR 150


>CC3309 Non COG
          Length = 157

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 28  TWTRDNFETHTGPFYHRMDENGRITCAFRVGKKHLNGSGNVHGGCFMTFADYCLFALAGS 87
            W+R  F    GP +   +  G+   AFRV + H NG GN HGG  M+FAD     +   
Sbjct: 21  NWSR-GFGRQIGPLFEHREGPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISL 79

Query: 88  VLQGPGVTVSFASEFLDAAREGDLIECTGEVTRAGMSLIFVRGMLTSAERPLFSFSGTIK 147
                 VTV    +FL  A+ GD +E  GE+      L  VRG + + ER L + +G  K
Sbjct: 80  QKSYSWVTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGVFK 139

Query: 148 RVKRR 152
            +  R
Sbjct: 140 ALSAR 144


>PA0474 [Q] COG2050 Uncharacterized protein, possibly involved in aromatic
           compounds catabolism Pae Pseudomonas aeruginosa
          Length = 134

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 39  GPFYHRMDENGRITCAFRVGKKHLNGSGNVHGGCFMTFADYCL-FALAGS-VLQGPGVTV 96
           GPF+ R D   ++  A R+ +KH N  G  HGG   T AD  L +A+A S     P VTV
Sbjct: 22  GPFFCRQDAQRQLVVALRIDEKHCNHGGTAHGGLLSTLADVGLGYAMAFSREPPQPMVTV 81

Query: 97  SFASEFLDAAREGDLIECTGEVTRAGMSLIFVRGMLTSAERPLFSFSGT 145
               +F   AR GD +E    V + G  + F    L S ER + S SG 
Sbjct: 82  GLRLDFCGVARVGDWLEVHTRVDKLGQRMAFASARLHSGERLVASASGV 130