BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0074.p (404 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr2359_1 Non COG 190 5e-48 PA1668 [S] COG3455 Uncharacterized protein conserved in bacteria... 133 7e-31 mlr2359_2 [N] COG1360 Flagellar motor protein Mlo Mesorhizobium ... 126 8e-29 PA0078_1 [S] COG3455 Uncharacterized protein conserved in bacter... 110 6e-24 PA0078_2 [N] COG1360 Flagellar motor protein Pae Pseudomonas aer... 99 2e-20 >mlr2359_1 Non COG Length = 372 Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 4/258 (1%) Query: 25 LGRLRVALMRASFASLMEQVADAIKFFEKDIRSAGISEHQANTAKYILCATADDIVQHIP 84 G+LR+ + A+L E +ADAI+ F+ I AGI E A AK+ LC T DD+V ++P Sbjct: 109 FGQLRLIPVERQAAALAEHIADAIETFDHTIAKAGIGEEDARIAKFALCETTDDLVGNLP 168 Query: 85 TDDRHVWAQYSMLSRFFGERVGGVRFFEILDHLKTDPLVNYPVLELQHACLALGFQGIHR 144 ++ W Q+S++ +FF R G F+E L+++ P +Y +LEL HACL+LGF+G +R Sbjct: 169 WPNKETWLQHSLVVQFFHTRPTGTGFYEALNNILAKPEAHYDLLELMHACLSLGFEGQYR 228 Query: 145 TSPGGLANLQVIQRNLYETLRRVRPKPTNDLSPHWRGQALAGRRKHLRIPVWLVAAVVAA 204 G L+ ++R++Y+TLR RP+ D+SP W+G A A R R+P+W +AA AA Sbjct: 229 ELSGERNTLERVRRDVYDTLRYFRPRAAEDISPRWQGMAAAMARPGGRLPLWAIAAAAAA 288 Query: 205 LLTGSYFVLRTLLAGRAENAAQVALALHPGDPIELKRRVVAPPPPP----PPPPPPDRIT 260 L+T ++F LR L+ + A LAL+P P+ ++R VA P P PP P T Sbjct: 289 LVTVAFFGLRILITDEGDATAGALLALNPSAPVTIERASVAAPAEPVQAKPPSPIHPDTT 348 Query: 261 QLQRIRNALAQEKTACAM 278 Q+ RIR ALAQ+ A + Sbjct: 349 QIDRIRAALAQQIAAGGL 366 >PA1668 [S] COG3455 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 289 Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 112/201 (55%), Gaps = 4/201 (1%) Query: 12 NPVMRAGGPLLQLLGRLRVALMRASFASLMEQVADAIKFFEKDIRSAGISEHQANTAKYI 71 NP++ A LL + RL+ + + + A+L E++ A+K FE G+ Q A+Y+ Sbjct: 61 NPLVAAASELLSEVVRLKHSTVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYV 120 Query: 72 LCATADDIVQHIPTDDRHVWAQYSMLSRFFGERVGGVRFFEILDHLKTDPLVNYPVLELQ 131 LC D+ V P + W++ S+LS F E GG +FF++LD L +P+ + P+LEL Sbjct: 121 LCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELM 180 Query: 132 HACLALGFQGIHRTSPGGLANLQVIQRNLYETLRRVRPKPTNDLSPHWRGQALAGRRKHL 191 + CLALGF+G +R G+ +L I LY +R++R +LSPHW+G L+ +R+ L Sbjct: 181 YLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQG--LSDQRRGL 238 Query: 192 R--IPVWLVAAVVAALLTGSY 210 +P W+VA L Y Sbjct: 239 VRIVPWWMVALFTLVCLVVMY 259 >mlr2359_2 [N] COG1360 Flagellar motor protein Mlo Mesorhizobium loti Length = 132 Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 65/120 (54%), Positives = 84/120 (70%), Gaps = 1/120 (0%) Query: 286 FIVIRVCDLALFASGQATILDGFKPIAARVAATLDKEPGRIRVVGHTDS-SPIRTVRFPS 344 FIV+ + + LFASGQA + F+PIAA +A LD E G I++VGHTD+ P ++ F S Sbjct: 2 FIVVEISNQLLFASGQAELKAQFQPIAADIAKALDAEAGPIKIVGHTDNVKPKKSSAFKS 61 Query: 345 NFELSVERAKAVAAALKPGLADGSRIDVDGKGSDSPIASNSTPEGRAKNRRVEIFIERSE 404 NF+LSV RAKAV A + L D SR+ VDGKG D PIA N+T +GRAKNRRV++ I + E Sbjct: 62 NFDLSVARAKAVQAMIARQLKDPSRLSVDGKGEDEPIADNATADGRAKNRRVDVMIPKQE 121 >PA0078_1 [S] COG3455 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 293 Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 111/211 (52%) Query: 12 NPVMRAGGPLLQLLGRLRVALMRASFASLMEQVADAIKFFEKDIRSAGISEHQANTAKYI 71 NP+ +A GPLL +L RLR + + ASL Q+ ++ FE+ R AG++ + A+Y+ Sbjct: 66 NPLEQAAGPLLAMLTRLRNTIAHPAPASLRAQLLGYLRQFEEKARQAGVAPDEVMLARYV 125 Query: 72 LCATADDIVQHIPTDDRHVWAQYSMLSRFFGERVGGVRFFEILDHLKTDPLVNYPVLELQ 131 LC D+ V P W + S+L E GG + F++L+H +P +LEL Sbjct: 126 LCTALDEAVLSTPWGSTSDWGKQSLLITLHNEAWGGEKVFQLLEHCLQNPHQRLHLLELL 185 Query: 132 HACLALGFQGIHRTSPGGLANLQVIQRNLYETLRRVRPKPTNDLSPHWRGQALAGRRKHL 191 + C +LGF+G +R G + L+ ++ +R R + ++LSPHWRG ++ R Sbjct: 186 YLCTSLGFEGRYRVMHDGRSQLEALRERTAAVIRSTRGEYEHELSPHWRGLSVMRDRLSQ 245 Query: 192 RIPVWLVAAVVAALLTGSYFVLRTLLAGRAE 222 +P W+ A+ ALL F LR LA AE Sbjct: 246 YLPPWVGIAIGLALLLALLFGLRMKLAADAE 276 >PA0078_2 [N] COG1360 Flagellar motor protein Pae Pseudomonas aeruginosa Length = 156 Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%) Query: 258 RITQLQRIRNALAQEKTACAMTADQTASFIVIRVCDLALFASGQATILDGFKPIAARVAA 317 R+ + R+ LA + A + + V+ + LFAS A++ D F+P+ R+A Sbjct: 8 RVIERPRLARFLADDIKAQRVAVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIAD 67 Query: 318 TLDKEPGRIRVVGHTDSSPIRTVRFPSNFELSVERAKAVAAALKPGLADGSRIDVDGKGS 377 L K G++ V GH+D+ PI T+R+PSN++LS RA+ VA L D R +G+ Sbjct: 68 ALRKVKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTAEGRSD 127 Query: 378 DSPIASNSTPEGRAKNRRVEIFI 400 P+A+N++ EGRA+NRRVEI + Sbjct: 128 TEPVATNASAEGRARNRRVEITV 150