BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0043.p (325 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5300 [G] COG0395 ABC-type sugar transport system, permease co... 471 e-132 SMa1341 [G] COG0395 ABC-type sugar transport system, permease co... 323 3e-88 mll3381 [G] COG0395 ABC-type sugar transport system, permease co... 212 1e-54 mll8486 [G] COG0395 ABC-type sugar transport system, permease co... 174 2e-43 PA2340 [G] COG0395 ABC-type sugar transport system, permease com... 169 1e-41 >mll5300 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 316 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/316 (74%), Positives = 276/316 (87%) Query: 10 LARSSAHSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEP 69 ++ ++AHS+V S +K AGA++I YALI+I+PL+WI AT+FK+ D+IAYPPK++F+P Sbjct: 1 MSLTTAHSVVAPSANSKRIAGAIIIAYALISIVPLLWIFATSFKTPPDSIAYPPKIVFQP 60 Query: 70 TLEGYVNLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFG 129 ++EGY NLFT RTRQTP++I L P + D+ VRK +MVIAGPS +PRF+NSLII FG Sbjct: 61 SIEGYCNLFTTRTRQTPEYINSLGPATGFCDETVRKRNMVIAGPSNFLPRFLNSLIIAFG 120 Query: 130 STFLAVFLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRL 189 STF AVFLGTL+AY FSRF++PLADDLLFFILSTR MPP+AVAIPIYLMYR+L L+DT L Sbjct: 121 STFCAVFLGTLSAYGFSRFKVPLADDLLFFILSTRFMPPIAVAIPIYLMYRELGLSDTAL 180 Query: 190 GMILLYTAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATA 249 GMILLYTAVNVSLAVWLLKGFIDEIPREYEEAA++DGYTRLQA + VLPQA TGIAATA Sbjct: 181 GMILLYTAVNVSLAVWLLKGFIDEIPREYEEAAMIDGYTRLQAFWRTVLPQATTGIAATA 240 Query: 250 IFCLIFSWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVL 309 IFCLIF+WNEYAFA LLTSG AQT PPFIP IIGEGGQDWPAVAA TT+F+VPI++FT+L Sbjct: 241 IFCLIFAWNEYAFAALLTSGTAQTAPPFIPTIIGEGGQDWPAVAAGTTIFLVPILVFTIL 300 Query: 310 LRKHLLRGITFGAVRK 325 LRK LLRGITFGAVRK Sbjct: 301 LRKQLLRGITFGAVRK 316 >SMa1341 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 319 Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 166/307 (54%), Positives = 218/307 (71%), Gaps = 17/307 (5%) Query: 31 ALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLEGYVNLFTVRTRQTPDFIA 90 A V++ L+ + P+ WI +TAFK ++ A PP VIFEP + +V LFT R++ + Sbjct: 18 AAVLVITLLFLAPIYWITSTAFKPRNLATTIPPTVIFEPEISPFVKLFTKRSQ-----LR 72 Query: 91 KLPPPET-----WYDKLV--RKHDMVIAGPSKVV-----PRFVNSLIIGFGSTFLAVFLG 138 P PE W+++LV +V +G +V RF+NSLI+ ST LAV +G Sbjct: 73 SAPEPEDYAAAPWWERLVFDGGEKVVRSGRGQVQLSGYPNRFMNSLIVAITSTVLAVAMG 132 Query: 139 TLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLYTAV 198 T AY FSRF++ DLLFFILSTRM+PPV VAIP++LMYR + L DT G+I+LYTA Sbjct: 133 TFTAYGFSRFKVKGEADLLFFILSTRMLPPVVVAIPMFLMYRAVGLNDTHWGLIILYTAF 192 Query: 199 NVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIFSWN 258 N+S +VWL+KGFIDEIP+EYEEAALVDGYTRL+A K+VLP+A TGIAATA+FC I +WN Sbjct: 193 NLSFSVWLMKGFIDEIPKEYEEAALVDGYTRLEAFFKIVLPEAATGIAATAVFCFITAWN 252 Query: 259 EYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLLRGI 318 EYAFA+++T+ AQT PPFIP +G G DW +AA T LF++P+ +FT LLR HLLRG+ Sbjct: 253 EYAFALIMTNRRAQTAPPFIPSQVGSGLPDWTVIAAGTFLFLLPVAIFTFLLRNHLLRGM 312 Query: 319 TFGAVRK 325 +FGA+RK Sbjct: 313 SFGAIRK 319 >mll3381 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 312 Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 183/308 (59%), Gaps = 38/308 (12%) Query: 33 VILYALITILPLVWIVATAFKSQSDAIAYPPKV-------------IFEPTLEGYVNLFT 79 V + A I LP+++I+ TAFK Q DA+ PP + +F+PTLE + ++F+ Sbjct: 28 VAIVAFIYFLPVLFIIFTAFKPQGDALLVPPTLSPTSLFGLIPDHFVFKPTLENFGSVFS 87 Query: 80 VRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAVFLGT 139 TPD P T +D+ F NS+ I S LA+ +GT Sbjct: 88 --RSMTPD----GAPEATGFDR-----------------YFFNSIFIASASVLLALVIGT 124 Query: 140 LAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLYTAVN 199 LAA+ FSR+ + D LF IL+TRM+P + V IP+ LM+R + L+ + LG+I+LYTA N Sbjct: 125 LAAFGFSRYPLKGNDTYLFIILTTRMLPAIVVIIPVILMFRVVGLSGSYLGIIMLYTAFN 184 Query: 200 VSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIFSWNE 259 ++ +W++K F DE+ + E+AA +DG + ++ K+ LPQ + G+AAT +F LI +WNE Sbjct: 185 LAFTIWMMKSFFDELSPDVEDAARLDGSSGMRVFFKICLPQVIAGLAATFVFGLILTWNE 244 Query: 260 YAFAVLLTSGEAQTMPPFIPFIIGEGGQ--DWPAVAAATTLFVVPIVMFTVLLRKHLLRG 317 + FA+LL+ + +T+P + + GG+ DW +AA TLF+VP+ + T L+ HLLRG Sbjct: 245 FLFALLLSGPDTRTVPVAMNQAVSSGGRGTDWTLLAAIETLFLVPVFLVTFFLQNHLLRG 304 Query: 318 ITFGAVRK 325 +TFG V++ Sbjct: 305 VTFGTVKR 312 >mll8486 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 305 Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 173/306 (56%), Gaps = 28/306 (9%) Query: 25 TKAFAGALVILYALITILPLVWIVATAFKSQSDAIA--YPPKVIFEPTLEGYVNLFTVRT 82 ++ F ++ +ALI + P+ W + T+FKS D P V F+P +G+ +L Sbjct: 22 SRVFIYGALVFWALICLFPIYWTITTSFKSAVDVTQGHLIPFVDFQPDWKGWRSL----- 76 Query: 83 RQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAVFLGTLAA 142 L P + VR + RF+NS+I G++ LA+ +G+LAA Sbjct: 77 --------GLSPDSIFQTSTVRD---------EFFKRFMNSVITSVGASSLAIVIGSLAA 119 Query: 143 YAFSRFRIPLA----DDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLYTAV 198 Y +R+R A +D+ FF LS ++PPV +A+P ++YR++ L DTR+G++LLYT + Sbjct: 120 YGLTRYRYKFAWFKNEDISFFFLSQLILPPVVLALPFLVLYREVGLLDTRIGLVLLYTLM 179 Query: 199 NVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIFSWN 258 + + +W+++ + IP E EEAALVDG + A ++V+P A+ G+ A I ++ WN Sbjct: 180 VLPIVIWIMRDQFNSIPVELEEAALVDGLSIWGAFFRIVMPIALPGMVAAFILAMVLCWN 239 Query: 259 EYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLLRGI 318 EY FA LLTS +A+T+P + G G +W ++AA T + P+ + + L ++L+ G+ Sbjct: 240 EYFFAALLTSTDAKTIPVMVASQTGSQGINWWSMAALATAAIAPLAVIGIALERYLIMGM 299 Query: 319 TFGAVR 324 T GAV+ Sbjct: 300 TAGAVK 305 >PA2340 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 277 Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 161/299 (53%), Gaps = 33/299 (11%) Query: 26 KAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLEGYVNLFTVRTRQT 85 A G L AL+ P+ W++ T+FKS+ DA A PP+ IF+PTLE Y+++ + Sbjct: 12 NALLGLLCWGIALLLFFPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHI-----NER 66 Query: 86 PDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAVFLGTLAAYAF 145 D+ A W NSL+I +T L + + AAY+ Sbjct: 67 SDYFAY-----AW-----------------------NSLLISSSATLLCMLVAVPAAYSM 98 Query: 146 SRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLYTAVNVSLAVW 205 + F L ++LST+M+PPV V +PIYL+ +Q L D+RL +I++YT +N+ + VW Sbjct: 99 AFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQFGLLDSRLALIIVYTLINLPIVVW 158 Query: 206 LLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIFSWNEYAFAVL 265 ++ + +IP + EAA +DG Q + +V+LP A G+A+T + LI WNE +++ Sbjct: 159 MVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIARGGLASTLLLSLILCWNEAFWSLN 218 Query: 266 LTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLLRGITFGAVR 324 LTS A + + G W ++A +TL PI++F + +K L+RG++FGAV+ Sbjct: 219 LTSSAAAPLTALVASYSSPEGLFWAKLSAVSTLACAPILVFGWISQKQLVRGLSFGAVK 277