BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0042.p (324 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5301 [G] COG1175 ABC-type sugar transport systems, permease c... 436 e-122 SMa1339 [G] COG1175 ABC-type sugar transport systems, permease c... 248 1e-65 mll3383 [G] COG1175 ABC-type sugar transport systems, permease c... 199 8e-51 AGc4553 [G] COG1175 ABC-type sugar transport systems, permease c... 183 4e-46 TM0278 [G] COG1175 ABC-type sugar transport systems, permease co... 166 7e-41 >mll5301 [G] COG1175 ABC-type sugar transport systems, permease components Mlo Mesorhizobium loti Length = 315 Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/313 (66%), Positives = 250/313 (79%) Query: 12 HATIPGVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNL 71 + T V+ AR+V G+SD+ +AWLF++PTI LLLAINIFPL W I LSFT+ Sbjct: 3 NRTAENVARATPEPLARKVRGISDKGLAWLFISPTILLLLAINIFPLFWAIYLSFTNYRA 62 Query: 72 SMSYLPLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGH 131 + ++ +G N+ IL D D+W +QTTA FV ++ L+ ++GF LA LI+R+FRGH Sbjct: 63 NRPNEVVKNLGFANYQRILGDHDIWIAMQTTAHFVFWTILLETLIGFTLAWLIDRKFRGH 122 Query: 132 SFWTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWT 191 +FWTT+IL+PMMLSPAVVGNFW L +PQIG F+Y+IS +G+PP+S M V+LAPW+ Sbjct: 123 AFWTTLILVPMMLSPAVVGNFWRFLYEPQIGLFSYVISFVSGIPPTSIQMLSNVSLAPWS 182 Query: 192 IVLVDTWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVL 251 I++VDTWMW PYVMLICLAGLRSIP+YIYEAAEVDRAS WRQFWSITLPM +PF+MLAVL Sbjct: 183 IIIVDTWMWTPYVMLICLAGLRSIPEYIYEAAEVDRASNWRQFWSITLPMALPFIMLAVL 242 Query: 252 FRAIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAA 311 FR I+NFKMFDMVNLLT GGPGSTTE+ SITLKR AFE WRTGYSSA AIILFV VFG A Sbjct: 243 FRGIDNFKMFDMVNLLTGGGPGSTTEVASITLKRQAFESWRTGYSSAFAIILFVAVFGLA 302 Query: 312 NIYVKALNKVKQR 324 NIYVKALNKVKQR Sbjct: 303 NIYVKALNKVKQR 315 >SMa1339 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 316 Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 13 ATIPGVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLS 72 AT+ S ++SRAA R GLSD I LF+ PTI L+ NIFPL++ + SFT S Sbjct: 17 ATVVMTSLDSKSRAASR--GLSDIKIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRAS 74 Query: 73 MSYLPLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHS 132 + P FVGL N+ ++LND +W TA++VI SV QVVVGFG A+L+NR+ Sbjct: 75 TN-APATFVGLQNYRELLNDPFIWANFAITAKYVIVSVTGQVVVGFGTAMLLNREIPFKG 133 Query: 133 FWTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTI 192 TT++LLPMMLS AVVG FW LL P G NY + L SF +A + + Sbjct: 134 LITTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYALGL------GSFEWLANPEMALYAV 187 Query: 193 VLVDTWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLF 252 + D WMW+P+VML+ LAGL ++P ++YEAA +DRA + F+ ITLP+ P LM+A++F Sbjct: 188 AITDIWMWSPFVMLLSLAGLSAVPRHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIF 247 Query: 253 RAIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAAN 312 R +E FK FD+ +LTS TTE++SI L + AF++W+TG S ALA I+ + V N Sbjct: 248 RTMEAFKTFDLAYILTS---QPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMVLAITN 304 Query: 313 IYVKALNKVKQR 324 IYVK LN+VK+R Sbjct: 305 IYVKYLNRVKER 316 >mll3383 [G] COG1175 ABC-type sugar transport systems, permease components Mlo Mesorhizobium loti Length = 353 Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 118/284 (41%), Positives = 167/284 (58%), Gaps = 11/284 (3%) Query: 41 LFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYLPLRFVGLDNFSDILNDE----DVW 96 L VAP IA+L +NIFPL+W + LSF + + +RFVGL N+ IL ++ W Sbjct: 72 LLVAPAIAVLFVMNIFPLLWSLGLSFFAYQANQQ--TIRFVGLGNYVRILTNDLAAHATW 129 Query: 97 FRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTTIILLPMMLSPAVVGNFWTLL 156 L TA FV+ +V+ Q++VGF LA+L +QF + ++L PMMLS G F+T Sbjct: 130 GALINTAMFVVFTVSAQMIVGFLLAILFAKQFPLRKYLLILVLTPMMLSVVASGVFFTYY 189 Query: 157 LQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVDTWMWAPYVMLICLAGLRSIP 216 P G +Y+I+ +G + F + A IV D WMW+P+VML+ LAGL S+P Sbjct: 190 YDPTFGILSYVINSISG---NQFILMSNKVGAVAGIVFADAWMWSPFVMLLVLAGLVSVP 246 Query: 217 DYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIENFKMFDMVNLLTSGGPGSTT 276 Y+YEAA +DR S+WRQFW IT P LMLA+LFR IE FK+ D+V LLT GG + T Sbjct: 247 KYLYEAAAIDRISSWRQFWMITFPYIRGLLMLALLFRTIEAFKLADLVILLTKGGNDTLT 306 Query: 277 ELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANIYVKALNK 320 +S L R A E+ +T +A++ ++ V N+Y+ N+ Sbjct: 307 --ISYHLIRIANEQNKTSEGAAISYLMLFMVIVLTNLYLYLANR 348 >AGc4553 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 312 Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 16/311 (5%) Query: 14 TIPGVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSM 73 T GVS SR R W FV P + ++ A+ +FP V+ + +S L Sbjct: 9 TKTGVSRAEGSRPPRLAPNY------WPFVIPALVVISAVIVFPWVFTLWMSVHRWTLGQ 62 Query: 74 SYLPLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSF 133 F+G DN+ + +D W L T + + SV + +G AL+ + QF F Sbjct: 63 EQ---SFIGFDNYIRLASDLRFWESLWHTLIYTVLSVVAPLFLGTLAALVFDAQFPLRGF 119 Query: 134 WTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIV 193 + ++PMM +P + WT++ PQ+G NYL+SL G+ P + + Q + P ++V Sbjct: 120 LRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLI-GIGPLEW-IYNQSTVIP-SLV 176 Query: 194 LVDTWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFR 253 LV+TW W P VMLI L GL ++P YE+AE+D A+AW++F +T+PM PFLM+AV+ R Sbjct: 177 LVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMIAPFLMIAVIIR 236 Query: 254 AIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANI 313 +I+ K FD++ +T GGPG+ +E ++I L AF + GY SA+A++ FV + + + Sbjct: 237 SIDAVKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVVFFVIIVALSFV 296 Query: 314 YVKALNKVKQR 324 L V+QR Sbjct: 297 ----LLMVRQR 303 >TM0278 [G] COG1175 ABC-type sugar transport systems, permease components Tma Thermotoga maritima Length = 294 Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 158/292 (54%), Gaps = 6/292 (2%) Query: 33 LSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYLPLRFVGLDNFSDILND 92 + R + WL V P +AL LA+ I+P +MI SF +LS S F+GL N+ I D Sbjct: 1 MRKRIVPWLMVLPVLALFLAMTIYPFGFMIWASFRDYDLSKS-AETHFIGLSNYFQIFRD 59 Query: 93 EDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTTIILLPMMLSPAVVGNF 152 ++ TA+ + +V +++V+G +A LI R +G + +L+PMM+ PAV G Sbjct: 60 STAIESMKFTAKLLSIAVPVELVLGVLIAFLI-RGVKGEKIIRSSLLIPMMIPPAVSGVA 118 Query: 153 WTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVDTWMWAPYVMLICLAGL 212 W +L GP N+ +SLF GVP S G A I+++D W W P++ L+ AGL Sbjct: 119 WKMLYNFAFGPVNWFLSLF-GVP--KISWLGDPFYAQLGIIIIDVWQWTPFIFLMIYAGL 175 Query: 213 RSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIENFKMFDMVNLLTSGGP 272 +SIP + +AA VD A R F + P+ P +++A++ R I+ K FD+V + T GGP Sbjct: 176 QSIPQDLIDAARVDGADWGRVFLHVEFPLLRPLILVALVLRIIDCLKTFDIVFMTTWGGP 235 Query: 273 GSTTELVSITLKRAAFE-KWRTGYSSALAIILFVTVFGAANIYVKALNKVKQ 323 GS T S + + W GY+SAL+++L + N+ + + +Q Sbjct: 236 GSATHTYSFYIYKVGISFGWNIGYASALSVLLLIVAIVLVNVVFRLVRMRQQ 287