BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0041.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5302 [G] COG1653 ABC-type sugar transport system, periplasmic...   102   2e-22
SMa1337 [G] COG1653 ABC-type sugar transport system, periplasmic...    82   4e-16

>mll5302 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Mlo Mesorhizobium loti
          Length = 443

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 60/80 (75%)

Query: 3   AALKAVVDAPDFPKSAAFAPQFLESMGIVKDFWAEPSYAQLLLDMQKRVHDYVVADKGTA 62
           + L AVV  P FP S  +A  FL+SM IVKDFWAEPSYA LL   QKR HDYVVA +G+A
Sbjct: 363 SCLNAVVKDPKFPASQPYAQAFLDSMAIVKDFWAEPSYAPLLQASQKRFHDYVVAGQGSA 422

Query: 63  QQALDLLVKDWTKVFKEQGK 82
           + ALD LVKDWT+VF++ GK
Sbjct: 423 KDALDGLVKDWTQVFQDDGK 442


>SMa1337 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Sme Sinorhizobium meliloti
          Length = 443

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 52/76 (68%)

Query: 8   VVDAPDFPKSAAFAPQFLESMGIVKDFWAEPSYAQLLLDMQKRVHDYVVADKGTAQQALD 67
           V+++ +F  +  +   F E+M  VKDFWA P YA+LL+ M +R++ YV A +GTA++ALD
Sbjct: 368 VLESEEFQNATPYNKAFYETMFRVKDFWATPEYAELLIQMNQRIYPYVTAGQGTAKEALD 427

Query: 68  LLVKDWTKVFKEQGKQ 83
            L KDW   FK+ G+Q
Sbjct: 428 ALAKDWNATFKKYGRQ 443