BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0025.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   116   4e-26
PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   111   1e-24
VC0781 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae      110   2e-24
VC2485 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae      108   7e-24
PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   108   7e-24

>PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 302

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 7/159 (4%)

Query: 1   VSFRTLDLNLLKVFEALMTEGSVTRAASALTMTQPAVSNALARLRDALGDPLFVRTASGI 60
           ++ +T DLNLL+V +AL+ E +V+RAA  L ++QPAVSNAL RLR+ L DPL VR    +
Sbjct: 1   MNIQTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRLRELLDDPLLVRAGRAM 60

Query: 61  RPTQRAVALWQPIGDALEHVRHAL-DEDAFDPRQTQAEFILSMSDYVSSLVMPRLLNRFS 119
           +PT RA+AL  PI  AL  +  +L D + FDP +++  F ++++DYV  + MP L+ R S
Sbjct: 61  QPTPRALALEAPIRAALRQIEQSLGDGEGFDPGRSRQRFTVAVTDYVELICMPALMRRLS 120

Query: 120 EVAPSARI---HTVPNTILEIGDRLEDNRVDCVLSVYVN 155
           E AP   I   H  P    E  D+ E   +D VL  + N
Sbjct: 121 ERAPGISIAIQHLTPTLPAEALDKGE---LDLVLGRFEN 156


>PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 310

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 1   VSFRTLDLNLLKVFEALMTEGSVTRAASALTMTQPAVSNALARLRDALGDPLFVRTASGI 60
           ++   +DLNL  VF+A+ TE ++TRA   + +TQPAVSNAL+RLR+   DPLFVRTA G+
Sbjct: 1   MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGM 60

Query: 61  RPTQRAVALWQPIGDALEHVRHALDED-AFDPRQTQAEFILSMSDYVSSLVMPRLLNRFS 119
            PT  A  +  P+ +AL+ +R ++ E  +FDP+Q    + +SM+D   ++++P L  R  
Sbjct: 61  VPTPMAQNIIGPVRNALQLLRVSVQESRSFDPQQANKTYRISMTDLTEAVILPPLFQRLR 120

Query: 120 EVAPSARIHTVPNTILEIGDRLEDNRVDCVLSVYVN 155
            +AP+  I +      E    L   R+D  +   +N
Sbjct: 121 RLAPNVHIESFLAKRRETTKELAAGRLDFAVDAPLN 156


>VC0781 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 308

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 9/144 (6%)

Query: 1   VSFRTLDLNLLKVFEALMTEGSVTRAASALTMTQPAVSNALARLRDALGDPLFVRTASGI 60
           +  R  DLNLL VF+++M  GSV++AA  L MT  AVS  L+RLR+ +GDPLF+R   G+
Sbjct: 2   IMLRDYDLNLLTVFDSVMKLGSVSKAADKLGMTSAAVSQNLSRLREQVGDPLFIRQGRGL 61

Query: 61  RPTQRAVALWQPIGDALEHVRHALDEDA-FDPRQTQAEFILSMSDYVSSLVMPRLLNRFS 119
           +PTQ A+ + + + + L  +R  L+ DA FDP  ++ EFI+    Y   +V+P LL + S
Sbjct: 62  QPTQYALNMHKHVAEGLSAIRFGLETDAGFDPATSKREFIIGGQGYFDLVVLPPLLQKIS 121

Query: 120 EVAPSARI--------HTVPNTIL 135
           ++AP   +        H  P+ +L
Sbjct: 122 DIAPHITVNLKSYEDDHFTPSQVL 145


>VC2485 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 321

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 3/197 (1%)

Query: 2   SFRTLDLNLLKVFEALMTEGSVTRAASALTMTQPAVSNALARLRDALGDPLFVRTASGIR 61
           + R +DLNLL VF+A+M E ++TRAA  L M+QPAVSNA+ARL+    D LF+R   GI+
Sbjct: 21  TLRGVDLNLLTVFDAVMQEQNITRAAHNLGMSQPAVSNAVARLKVMFNDELFMRQGRGIQ 80

Query: 62  PTQRAVALWQPIGDALEHVRHALDEDAFDPRQTQAEFILSMSDYVSSLVMPRLLNRFSEV 121
           PTQRA  L+ PI  AL+ +R+ L    F P  +   F L++         P+++    E+
Sbjct: 81  PTQRARQLFGPIRQALQLIRNELPSSVFTPETSTRLFKLAICSPCDLRFAPQIMASIDEL 140

Query: 122 APSARIHTVPNTILEIGDRLEDNRVDCVLSVYVNEAQXAAGGDPLP---LAVDRRVRLHD 178
           APS ++H       +I +R+    +D V+     + Q  +  +      + V  ++  H 
Sbjct: 141 APSVQLHLDAEFDRQIAERMRYQEIDFVIDYARFDDQGFSSTEIFQDELVVVASKLHPHI 200

Query: 179 AARPSAGQAEAAQHPEL 195
               +A Q  A +H +L
Sbjct: 201 QGSITAEQLSAEKHAKL 217


>PA3321 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 304

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 90/151 (59%)

Query: 3   FRTLDLNLLKVFEALMTEGSVTRAASALTMTQPAVSNALARLRDALGDPLFVRTASGIRP 62
            R +DLNLL V +AL++E  V+RAA  L M+QPAVS+AL RLR+  GDPL VR  S ++ 
Sbjct: 7   LRRIDLNLLVVLDALLSERHVSRAAQRLAMSQPAVSHALGRLRELFGDPLLVRVKSRMQL 66

Query: 63  TQRAVALWQPIGDALEHVRHALDEDAFDPRQTQAEFILSMSDYVSSLVMPRLLNRFSEVA 122
           T  A+ L   +  +L+ VR  +    F+P +++  F L MSDY + +V+P LL +   +A
Sbjct: 67  TSLALELAPKLQASLDQVRGVIGGPTFEPVRSRRHFRLGMSDYGAWVVLPALLRQQQALA 126

Query: 123 PSARIHTVPNTILEIGDRLEDNRVDCVLSVY 153
           P      V    LE   ++ + ++DC L V+
Sbjct: 127 PGVSFGIVQEPRLETARQVAEGQLDCALGVF 157