BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0014.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0255 [J] COG0566 rRNA methylases Mlo Mesorhizobium loti 251 7e-67 AGc3623 [J] COG0566 rRNA methylases Atu Agrobacterium tumefacien... 249 3e-66 SMc01327 [J] COG0566 rRNA methylases Sme Sinorhizobium meliloti 238 1e-62 BMEI0741 [J] COG0566 rRNA methylases Bme Brucella melitensis 229 6e-60 CC1239 [J] COG0566 rRNA methylases Ccr Caulobacter vibrioides 159 6e-39 >mll0255 [J] COG0566 rRNA methylases Mlo Mesorhizobium loti Length = 235 Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 134/224 (59%), Positives = 164/224 (73%), Gaps = 1/224 (0%) Query: 3 LYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIAT-RVAPEIVRPSEIDRRLTPDGV 61 LYG HTV AAL NP R IRK+ +T NAA+RL E++A E+V P +ID+ D V Sbjct: 3 LYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSDAV 62 Query: 62 HQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSP 121 HQG+L EA+PL +D L +VLVLDQITDPHNVGAILRSA AF A++TTARHSP Sbjct: 63 HQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSP 122 Query: 122 EATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPLA 181 + +GVLAKSASGALE + + V+NLA AL +L+E GFQT+GLDS+G +L + +A Sbjct: 123 QESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRIA 182 Query: 182 LVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALY 225 LVLGAEGKGLRQ TRET +ARLDMPG I+SLNVSNA ++LY Sbjct: 183 LVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLY 226 >AGc3623 [J] COG0566 rRNA methylases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 135/233 (57%), Positives = 162/233 (69%), Gaps = 1/233 (0%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRL-ADENIATRVAPEIVRPSEIDRRLTPD 59 V LYG HTV AAL+NP R + KL +T NA RL E A EIV P EID+ L P+ Sbjct: 59 VHLYGLHTVRAALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPE 118 Query: 60 GVHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARH 119 +HQG++ E PLP +D L ++LVLDQ+TDPHNVGAI+RSA AF A++TT RH Sbjct: 119 AIHQGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRH 178 Query: 120 SPEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAP 179 SP +GVLAKSASGALEL+P + + NLA L EL++ GF +VGLDSEG + + A Sbjct: 179 SPTESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAK 238 Query: 180 LALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLG 232 +ALVLGAEGKGLRQ TRET +ARLDMPGEIKSLNVSNA +ALY LG Sbjct: 239 IALVLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLG 291 >SMc01327 [J] COG0566 rRNA methylases Sme Sinorhizobium meliloti Length = 291 Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/219 (57%), Positives = 157/219 (71%), Gaps = 1/219 (0%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAP-EIVRPSEIDRRLTPD 59 V+LYG HTV AAL NP+R I +L +T+NAA RL ++ P E V P E+DR L PD Sbjct: 58 VLLYGLHTVRAALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPD 117 Query: 60 GVHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARH 119 +HQG++ E PLP ++ L ++LVLDQ+TDPHNVGAI+RSA AF A++TT RH Sbjct: 118 AIHQGVMLETQPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRH 177 Query: 120 SPEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAP 179 SP +GVLAKSASGALEL+P + + NLA L EL+E GF T+GLDSEG + L Sbjct: 178 SPTESGVLAKSASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDK 237 Query: 180 LALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSN 218 +ALVLG+EGKGLRQ TR+T + +ARLDMPG IKSLNVSN Sbjct: 238 IALVLGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276 >BMEI0741 [J] COG0566 rRNA methylases Bme Brucella melitensis Length = 303 Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 123/226 (54%), Positives = 157/226 (69%), Gaps = 1/226 (0%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAP-EIVRPSEIDRRLTPD 59 V LYG HTV AA+ NP R I ++ T N RL + P EIV P +ID+ + Sbjct: 69 VRLYGLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSE 128 Query: 60 GVHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARH 119 VHQG++ EA+PL + + L ++LVLDQ+TDPHNVGAI+RSA AF A++TT+ H Sbjct: 129 AVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHH 188 Query: 120 SPEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAP 179 SP+ TGVLAK+ASGALEL+ + V+NLA A+ EL+ GFQT+GLDS+G ++ Sbjct: 189 SPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNR 248 Query: 180 LALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALY 225 +ALVLGAEGKGLRQ TRET +ARLDMPGEIKSLNVSNA ++LY Sbjct: 249 IALVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294 >CC1239 [J] COG0566 rRNA methylases Ccr Caulobacter vibrioides Length = 278 Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 139/227 (61%), Gaps = 6/227 (2%) Query: 3 LYGWHTVSAALANPDRHI-RKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDGV 61 ++G H V AALANP R ++L T + AKRLA ++ +++ EI ++L V Sbjct: 41 IWGTHAVEAALANPRRPAPKRLLATPDRAKRLA-PHLQKLTCLQVMEGQEIAKQLPQGAV 99 Query: 62 HQGL---LAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTAR 118 HQGL + E +PL + T A +G +++LDQITDP N+GAI RSAAAF K ++ R Sbjct: 100 HQGLALKIDEPEPLTIAELGTPA-KGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDR 158 Query: 119 HSPEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQA 178 H+P +GVLAK+A GA++ P V NL+RAL EL + G++ V L E + L Sbjct: 159 HAPALSGVLAKTAVGAVDKAPYARVVNLSRALEELADLGWRAVALAGEAEQSLDAVLDSQ 218 Query: 179 PLALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALY 225 P LVLG+EG+G+R+L E C + ++ MPG +SLNVS A +ALY Sbjct: 219 PTVLVLGSEGEGVRRLVAEHCDALGKIPMPGGFESLNVSAAAAIALY 265