BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0098.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01621 [G] COG0235 Ribulose-5-phosphate 4-epimerase and relate... 308 9e-84 SMb20490 [G] COG0235 Ribulose-5-phosphate 4-epimerase and relate... 211 9e-55 ZfucA [G] COG0235 Ribulose-5-phosphate 4-epimerase and related e... 204 2e-52 ECs3660 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 204 2e-52 fucA [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ep... 201 2e-51 >SMc01621 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Sme Sinorhizobium meliloti Length = 222 Score = 308 bits (788), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 140/212 (66%), Positives = 173/212 (81%) Query: 5 ERQLREAIIAKCRWMNASGLNQGTSGNISARYKDRMLITPSATPYDSMKPEMIASMPLEG 64 E QLR++II CR MNA GLNQGTSGNIS R+ MLITPSA PY M P+MI +MP+EG Sbjct: 3 ELQLRQSIIDHCRHMNAIGLNQGTSGNISLRHGGTMLITPSAIPYAEMTPDMIVAMPIEG 62 Query: 65 DYGAWEGPLQPSTEWRFHLDITRARPDVGAIVHTHSTYATVLAIARKPIPACHYMMAAFG 124 +YGAW GP +PS EW FHLDI RARPDVGA+VHTH++++T+LA+ARKPIPACHYM+AAFG Sbjct: 63 EYGAWVGPKKPSVEWPFHLDILRARPDVGAVVHTHASFSTILAMARKPIPACHYMIAAFG 122 Query: 125 GTEIRCAGYARYGTKELSDHAITALEGRNGCLLANHGMIALGANLDKAMWLAVELETIAR 184 G+++R A YARYGTK LS++ + A+EGR+ CL+ANHGMIA G++L+KAMW AVELETIA+ Sbjct: 123 GSDVRVADYARYGTKALSENVLKAMEGRSACLMANHGMIATGSSLEKAMWAAVELETIAK 182 Query: 185 QYYLSLALDSRVILTDEEIADTAKGFSTYGLQ 216 QYY L + V+L EEIA +GF+TYG Q Sbjct: 183 QYYHVLLIGGPVVLPQEEIAGVIEGFATYGHQ 214 >SMb20490 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Sme Sinorhizobium meliloti Length = 232 Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 141/223 (63%), Gaps = 7/223 (3%) Query: 8 LREAIIAKCRWMNASGLNQGTSGNISARYKDRMLITPSATPYDSMKPEMIASMPLEGDYG 67 LR ++ CR MN SG+NQGT+GN+S R D LITPS+ PYD+M+P+ + M +G Y Sbjct: 11 LRREMVDICRRMNLSGINQGTAGNLSVRTDDGFLITPSSMPYDTMQPDDLVEMGFDGTYV 70 Query: 68 AWEGPLQPSTEWRFHLDITRARPDVGAIVHTHSTYATVLAIARKPIPACHYMMAAFGGTE 127 +PS+EWRFH DI RAR D+ ++H HS YAT LA K IP+ HYM GGT Sbjct: 71 GH----RPSSEWRFHRDILRARTDIDVVLHCHSIYATTLACHHKTIPSFHYMTGIAGGTT 126 Query: 128 IRCAGYARYGTKELSDHAITALEGRNGCLLANHGMIALGANLDKAMWLAVELETIARQYY 187 IRCA YA +GT+ LSD+A+ AL+ R CLL HG I+LG L++A+WLA+E+ET++R Y Sbjct: 127 IRCAEYATFGTQALSDNALLALKDRLACLLGQHGQISLGKTLEQALWLAIEVETLSRIYV 186 Query: 188 LSLALDSRVILTDEEIADTAKGFS--TYGLQAPKPNKARATAK 228 +L L IL D+E+ +YG QAP P A+ Sbjct: 187 QALTLGEPPILPDDEMERVIAQMRRMSYG-QAPDPEGVNDVAR 228 >ZfucA [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases EcZ Escherichia coli O157:H7 EDL933 Length = 215 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/214 (47%), Positives = 140/214 (65%), Gaps = 4/214 (1%) Query: 4 EERQLREAIIAKCRWMNASGLNQGTSGNISARYKDRMLITPSATPYDSMKPEMIASMPLE 63 E +L II C M GLNQGT+GN+S RY+D MLITP+ PY+ + I ++ Sbjct: 2 ERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVF--ID 59 Query: 64 GDYGAWEGPLQPSTEWRFHLDITRARPDVGAIVHTHSTYATVLAIARKPIPACHYMMAAF 123 G+ EG L PS+EWRFH+ ++RPD A+VH H+ + T ++I +PIPA HYM+AA Sbjct: 60 GNGKHEEGKL-PSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRPIPAIHYMIAAA 118 Query: 124 GGTEIRCAGYARYGTKELSDHAITALEGRNGCLLANHGMIALGANLDKAMWLAVELETIA 183 GG I CA YA +GT+ELS+H AL+ R LL +HG+IA NL+KA+WLA E+E +A Sbjct: 119 GGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLA 178 Query: 184 RQYYLSLALDSRV-ILTDEEIADTAKGFSTYGLQ 216 + Y +LA+ V +L+DEEIA + F TYGL+ Sbjct: 179 QLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLR 212 >ECs3660 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Ecs Escherichia coli O157:H7 Length = 215 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/214 (47%), Positives = 140/214 (65%), Gaps = 4/214 (1%) Query: 4 EERQLREAIIAKCRWMNASGLNQGTSGNISARYKDRMLITPSATPYDSMKPEMIASMPLE 63 E +L II C M GLNQGT+GN+S RY+D MLITP+ PY+ + I ++ Sbjct: 2 ERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVF--ID 59 Query: 64 GDYGAWEGPLQPSTEWRFHLDITRARPDVGAIVHTHSTYATVLAIARKPIPACHYMMAAF 123 G+ EG L PS+EWRFH+ ++RPD A+VH H+ + T ++I +PIPA HYM+AA Sbjct: 60 GNGKHEEGKL-PSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRPIPAIHYMIAAA 118 Query: 124 GGTEIRCAGYARYGTKELSDHAITALEGRNGCLLANHGMIALGANLDKAMWLAVELETIA 183 GG I CA YA +GT+ELS+H AL+ R LL +HG+IA NL+KA+WLA E+E +A Sbjct: 119 GGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLA 178 Query: 184 RQYYLSLALDSRV-ILTDEEIADTAKGFSTYGLQ 216 + Y +LA+ V +L+DEEIA + F TYGL+ Sbjct: 179 QLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLR 212 >fucA [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Eco Escherichia coli K12 Length = 215 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/214 (47%), Positives = 139/214 (64%), Gaps = 4/214 (1%) Query: 4 EERQLREAIIAKCRWMNASGLNQGTSGNISARYKDRMLITPSATPYDSMKPEMIASMPLE 63 E +L II C M GLNQGT+GN+S RY+D MLITP+ PY+ + I ++ Sbjct: 2 ERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVF--ID 59 Query: 64 GDYGAWEGPLQPSTEWRFHLDITRARPDVGAIVHTHSTYATVLAIARKPIPACHYMMAAF 123 G+ EG L PS+EWRFH+ ++RPD A+VH H+ + T ++I + IPA HYM+AA Sbjct: 60 GNGKHEEGKL-PSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAA 118 Query: 124 GGTEIRCAGYARYGTKELSDHAITALEGRNGCLLANHGMIALGANLDKAMWLAVELETIA 183 GG I CA YA +GT+ELS+H AL+ R LL +HG+IA NL+KA+WLA E+E +A Sbjct: 119 GGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLAHEVEVLA 178 Query: 184 RQYYLSLALDSRV-ILTDEEIADTAKGFSTYGLQ 216 + Y +LA+ V +L+DEEIA + F TYGL+ Sbjct: 179 QLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLR 212