BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0090.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7259 Non COG 361 1e-99 SMc01629 [K] COG2390 Transcriptional regulator, contains sigma f... 361 1e-99 BMEII0427 [K] COG2390 Transcriptional regulator, contains sigma ... 327 2e-89 RSc2127 [K] COG2390 Transcriptional regulator, contains sigma fa... 190 5e-48 YPO2324 [K] COG2390 Transcriptional regulator, contains sigma fa... 179 9e-45 >mlr7259 Non COG Length = 324 Score = 361 bits (926), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 173/312 (55%), Positives = 231/312 (74%) Query: 12 DGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECV 71 D E S+ATRAAWL++A GLTQSEVA RL + S KAHRLI +A++EG+++V+++G V+ECV Sbjct: 11 DDETSMATRAAWLHYAGGLTQSEVAKRLGLTSLKAHRLITKANQEGLVKVYIDGEVSECV 70 Query: 72 ALENDLAQRFGLSLCRVAPDLGEGDLPLKALALEGASFLRQILERGQDKVIGFGHGRTLA 131 LE++L++R+GL C V PD DLPLKAL + GA FL++ +ERG++ +IG GHGRTLA Sbjct: 71 ELEDELSRRYGLDYCEVVPDFDSEDLPLKALGIAGAQFLKREIERGEEALIGVGHGRTLA 130 Query: 132 AVVEQMPQTPARDAQFVSLLGGLTRKFAANPFDVIHKLAERTGAEAYLLPVPVFANSVAD 191 A VE +P+T +FVSLLGGLTRKF+ANP DVIH+LAERTGAEAY++PVP+FAN+ D Sbjct: 131 ACVEYLPRTSTDKIRFVSLLGGLTRKFSANPHDVIHRLAERTGAEAYVMPVPMFANTAED 190 Query: 192 RAVLMQQFGIADVFALARKASLLFVGIGQVSRDGFLVSSGMIKPDEVVELKRVGACADLL 251 R VL+ Q GI++VF LAR A LLF GIG R+ LV++GMI+ E+ E++R G +LL Sbjct: 191 RTVLLGQKGISEVFDLARSADLLFAGIGTAEREASLVATGMIEKGEMEEIRRNGGVGELL 250 Query: 252 GHFFSADGTVLDTDLSARATSMSMADLRKHRIVAIAGGPAKVTALRGVLRSGVLHGLIID 311 GHFF G + T +S RA +++ D+ RIVA+AGG KV A++ VL L GLI D Sbjct: 251 GHFFDEAGKAVATTVSDRALALTREDISSRRIVAVAGGKIKVRAIKSVLEGRYLKGLITD 310 Query: 312 EATAKALATDKP 323 E TA++L + P Sbjct: 311 ERTARSLVEETP 322 >SMc01629 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain Sme Sinorhizobium meliloti Length = 319 Score = 361 bits (926), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/312 (56%), Positives = 227/312 (72%) Query: 8 LPVIDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPV 67 + V D EAS+ATRAAWL++A GLTQ+EVA RL + S KAHRLI +A++EG+++V+++G V Sbjct: 7 MAVRDDEASMATRAAWLHYAGGLTQAEVAKRLGLTSLKAHRLIMKANQEGLVKVYIDGDV 66 Query: 68 AECVALENDLAQRFGLSLCRVAPDLGEGDLPLKALALEGASFLRQILERGQDKVIGFGHG 127 +ECV LE L+ R+GL C V PD DLPLKAL + GA FLR+ +ERG+ +IG GHG Sbjct: 67 SECVELEQKLSSRYGLDYCEVVPDFDSDDLPLKALGISGAQFLRREIERGETALIGVGHG 126 Query: 128 RTLAAVVEQMPQTPARDAQFVSLLGGLTRKFAANPFDVIHKLAERTGAEAYLLPVPVFAN 187 RTLAA +E MP+T + + +FVSLLGGLTRKF+ANP DVIH+LAERTGAEAY++PVP FAN Sbjct: 127 RTLAASIEYMPRTASNNTRFVSLLGGLTRKFSANPHDVIHRLAERTGAEAYVMPVPFFAN 186 Query: 188 SVADRAVLMQQFGIADVFALARKASLLFVGIGQVSRDGFLVSSGMIKPDEVVELKRVGAC 247 +V DR VL Q G+ +VF LA+ A LL VGIG R+ LV++GMI+ E+ E+++ G Sbjct: 187 TVEDRDVLFSQRGVREVFDLAKSADLLMVGIGTAEREASLVATGMIEMREIAEIQKAGGV 246 Query: 248 ADLLGHFFSADGTVLDTDLSARATSMSMADLRKHRIVAIAGGPAKVTALRGVLRSGVLHG 307 +LLGHFF G ++T LS R ++ DL+ R VAIAGG K +R VL SG L G Sbjct: 247 GELLGHFFDEKGRPIETALSNRTFTLGRQDLKNRRTVAIAGGRVKTRPIRAVLESGFLSG 306 Query: 308 LIIDEATAKALA 319 LI DE TA+ LA Sbjct: 307 LITDERTAQTLA 318 >BMEII0427 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain Bme Brucella melitensis Length = 316 Score = 327 bits (838), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 165/307 (53%), Positives = 217/307 (70%) Query: 12 DGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECV 71 D + SLA RAAWL+F AG+TQS VA RL + S KAHRLIA+A +G ++V ++G + EC+ Sbjct: 3 DADDSLALRAAWLHFVAGMTQSAVAKRLGLPSVKAHRLIAKAVADGAVKVTIDGDITECI 62 Query: 72 ALENDLAQRFGLSLCRVAPDLGEGDLPLKALALEGASFLRQILERGQDKVIGFGHGRTLA 131 LEN LA +GL C VAPD+GE LPL AL GA+F+R+ +E G +VIG GHGRTL+ Sbjct: 63 DLENRLADLYGLDYCEVAPDIGEEGLPLMALGHAGANFMRREIEHGDHEVIGIGHGRTLS 122 Query: 132 AVVEQMPQTPARDAQFVSLLGGLTRKFAANPFDVIHKLAERTGAEAYLLPVPVFANSVAD 191 A V MP+ A D +FVSLLGGLTR FAANP DV+H++AE+TG AY++PVP FAN+ D Sbjct: 123 AAVVYMPRVMANDLRFVSLLGGLTRNFAANPHDVMHRIAEKTGMPAYMMPVPFFANTAED 182 Query: 192 RAVLMQQFGIADVFALARKASLLFVGIGQVSRDGFLVSSGMIKPDEVVELKRVGACADLL 251 R VL+ Q G+ VF + +A L VGIG V LV+SGMI+ E+ E+ +G ++L Sbjct: 183 REVLLAQRGVTTVFDMGCRAELKIVGIGTVDAQAQLVTSGMIELGELEEIANLGGVGEML 242 Query: 252 GHFFSADGTVLDTDLSARATSMSMADLRKHRIVAIAGGPAKVTALRGVLRSGVLHGLIID 311 GHFF+A+G L+T L+ R + S+ + RIVA+AGG +KV A+R VL+SG L+GLI D Sbjct: 243 GHFFNANGQWLETALTGRTIAASVENADMSRIVALAGGLSKVDAIRAVLKSGRLYGLITD 302 Query: 312 EATAKAL 318 E TAKAL Sbjct: 303 ERTAKAL 309 >RSc2127 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain Rso Ralstonia solanacearum Length = 315 Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 173/304 (56%), Gaps = 5/304 (1%) Query: 17 LATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECVALEND 76 LATRAAWLY+ AG TQ+E+A++L + A RL+A A + +IRV V+ +A+C+ L Sbjct: 10 LATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRLADCLDLGAR 69 Query: 77 LAQRFGLSLCRVAPDLGEGDLPL---KALALEGASFLRQILERGQDKVIGFGHGRTLAAV 133 L++R+GLS+C V P + D P + LA+ GA + L + VI GRTL A Sbjct: 70 LSKRYGLSMCEVVP--VDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISSGRTLKAA 127 Query: 134 VEQMPQTPARDAQFVSLLGGLTRKFAANPFDVIHKLAERTGAEAYLLPVPVFANSVADRA 193 V Q+ Q + VS++G + A+N +DV ++E+TG + +LLP P+FA+S A+RA Sbjct: 128 VAQIAQIERPQHRLVSMVGAIAPDGASNRYDVAQAISEKTGGKHFLLPAPLFADSDAERA 187 Query: 194 VLMQQFGIADVFALARKASLLFVGIGQVSRDGFLVSSGMIKPDEVVELKRVGACADLLGH 253 V +L+ +A + FVGIG ++ L G I +E+ EL +GA A++LG Sbjct: 188 QWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGAVAEMLGI 247 Query: 254 FFSADGTVLDTDLSARATSMSMADLRKHRIVAIAGGPAKVTALRGVLRSGVLHGLIIDEA 313 A G + SAR TS+ + + +AIAGGP K A+ LR G L GL+ DE Sbjct: 248 PIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLSGLVTDET 307 Query: 314 TAKA 317 A+A Sbjct: 308 CARA 311 >YPO2324 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain Ype Yersinia pestis Length = 318 Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 1/312 (0%) Query: 12 DGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECV 71 D + A RAAW+Y+ AG TQ E+A+ L + A RL+A A G++ V + PVA C+ Sbjct: 5 DKKLDQAARAAWMYYVAGQTQHEIAEALGVSRQVAQRLVACAIDNGLVSVNITHPVARCM 64 Query: 72 ALENDLAQRFGLSLCRVAPDLGEGDLPL-KALALEGASFLRQILERGQDKVIGFGHGRTL 130 AL L QR+GL C+V P G + + +A+A+ GA + Q L + Q VIG G GR+L Sbjct: 65 ALAEQLQQRYGLHRCQVVPSQGMDNAGVQRAIAVAGAEVMAQFLRQEQPLVIGVGSGRSL 124 Query: 131 AAVVEQMPQTPARDAQFVSLLGGLTRKFAANPFDVIHKLAERTGAEAYLLPVPVFANSVA 190 A ++++P VSL+G + + +DV +AE+T ++LP P+FA+S A Sbjct: 125 KAAIDELPDVERPQHSCVSLIGAIAADGSCTRYDVPLWMAEKTQGRYFILPAPLFADSAA 184 Query: 191 DRAVLMQQFGIADVFALARKASLLFVGIGQVSRDGFLVSSGMIKPDEVVELKRVGACADL 250 DR + V A +A + F+GIG + L G I +V L A++ Sbjct: 185 DRDLWCNHRIYRTVTEKAAQADVTFIGIGSIGYHCPLHKDGFISAQDVDALLASHVVAEM 244 Query: 251 LGHFFSADGTVLDTDLSARATSMSMADLRKHRIVAIAGGPAKVTALRGVLRSGVLHGLII 310 LG+F ADG + L TS+ + + ++AIAGG K A++ L+ L+GL+ Sbjct: 245 LGNFIDADGQPVPYALDQCLTSVKLRIQPEKPVIAIAGGKEKHQAIKAALKGQWLNGLVT 304 Query: 311 DEATAKALATDK 322 DE +A L ++ Sbjct: 305 DEESAMVLLAEE 316