BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0013.p         (498 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3702 [T] COG3706 Response regulator containing a CheY-like rec...   149   2e-35
PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa                     141   3e-33
PA4843 [T] COG3706 Response regulator containing a CheY-like rec...   138   3e-32
RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  135   3e-31
aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus                         134   6e-31

>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 347

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 113/181 (62%), Gaps = 13/181 (7%)

Query: 322 LEVLATTDPLTGLFNRRHFLTTLDAEWSRFQRYYRSVSVLMVDIDHFKSINDRFGHAAGD 381
           L+ L  +D LTGL NRRHF   L+ EW R  R    +S+LM+D+D+FKS ND FGH AGD
Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226

Query: 382 EAIKAVAGICIRG-KRKSDVVGRVGGEEFAVLLPETTLSRARTVAERIRKRAEALSFRAD 440
           EA++ VAG    G  R SD+  R GGEEFA++LP T+   AR +AE++R+  E+L   + 
Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQI-SH 285

Query: 441 DRLVP---LTVSIGVAEALTSMPG-----IDALMKAADAALYQAKEHGRNRTECWSPPSP 492
           D+  P   LTVSIGV+   T +PG        L++ AD ALYQAK +GRN+      P P
Sbjct: 286 DQPRPGSHLTVSIGVS---TLVPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQPVP 342

Query: 493 P 493
           P
Sbjct: 343 P 343


>PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa
          Length = 525

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 113/186 (60%), Gaps = 4/186 (2%)

Query: 304 GRMLTFVDVTDLVRNA---RQLEVLATTDPLTGLFNRRHFLTTLDAEWSRFQRYYRSVSV 360
           G   T +   D+ R     ++L +LA+TD LTGL NR  FL   +      +R+      
Sbjct: 336 GEPATLIWCYDISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVA 395

Query: 361 LMVDIDHFKSINDRFGHAAGDEAIKAVAGICIRGKRKSDVVGRVGGEEFAVLLPETTLSR 420
           LM+DIDHFK+IND  GH  GD A++ VA    +G R+ D++GR+GGEEFA LLPE +L +
Sbjct: 396 LMLDIDHFKNINDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQ 455

Query: 421 ARTVAERIRKRAEALSF-RADDRLVPLTVSIGVAEALTSMPGIDALMKAADAALYQAKEH 479
           A  VAER+R   EAL     D   + +TVSIGVA    +   +++L+  AD+ALYQAK  
Sbjct: 456 ALDVAERLRAGVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSG 515

Query: 480 GRNRTE 485
           GRNRTE
Sbjct: 516 GRNRTE 521


>PA4843 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 542

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 102/171 (59%), Gaps = 1/171 (0%)

Query: 319 ARQLEVLATTDPLTGLFNRRHFLTTLDAEWSRFQRYYRSVSVLMVDIDHFKSINDRFGHA 378
           AR L+     D LTGL+N  H L  L+    R +R  R +S  M+DIDHFK +NDRFGH 
Sbjct: 370 ARSLKARMVRDSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHP 429

Query: 379 AGDEAIKAVAGICIRGKRKSDVVGRVGGEEFAVLLPETTLSRARTVAERIRKRAEALSFR 438
            GD  IK +A    +  RK+D +GR GGEEFAV+LP+T L  AR V + IR+R   + + 
Sbjct: 430 MGDRVIKGLALFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRFAEIHYP 489

Query: 439 ADDRLVPLTVSIGVAEALTSMPGIDALMKAADAALYQAKEHGRNRTECWSP 489
           A    +  T S G+AE LT    I ++ K AD ALY+AK  GRNR E + P
Sbjct: 490 AQPTDLRCTFSCGIAE-LTPDLDIKSMAKQADEALYRAKHGGRNRIEVYRP 539


>RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 177

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 103/175 (58%), Gaps = 7/175 (4%)

Query: 316 VRNARQLEVLATTDPLTGLFNRRHFLTTLDAEWSRFQRYYRSVSVLMVDIDHFKSINDRF 375
           +   R+   LA TD LTGL NRR     LDAEW R  R  + +SVLM+D+DHFK+ ND +
Sbjct: 2   IEEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHY 61

Query: 376 GHAAGDEAIKAVAGICIRG--KRKSDVVGRVGGEEFAVLLPETTLSRARTVAERIRKRAE 433
           GH  GD A++AVA  CI+   +R  D+  R GGEEF V+LP + L  A  VAE IR+   
Sbjct: 62  GHPDGDAALQAVAR-CIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAIL 120

Query: 434 ALSF-RADDRLVPLTVSIGVAE---ALTSMPGIDALMKAADAALYQAKEHGRNRT 484
            L+   A      LTVSIG A    A +  P    L KAADA LY+AK  GRNRT
Sbjct: 121 VLNIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRT 175


>aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus
          Length = 251

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 323 EVLATTDPLTGLFNRRHFLTTLDAEWSRFQRYYRSVSVLMVDIDHFKSINDRFGHAAGDE 382
           E +A TDPLTGL+NRR F    + E ++ +RY  + S+LM+DID+FK IND +GH  GD 
Sbjct: 81  ERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDL 140

Query: 383 AIKAVAGICIRGKRKSDVVGRVGGEEFAVLLPETTLSRARTVAERIRKRAEALSFRA-DD 441
            +K ++ I  R  R +D+V R GGEEF V+L  T L+ A   AE++R+  E       + 
Sbjct: 141 VLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNG 200

Query: 442 RLVPLTVSIGVAEALTSMPGIDALMKAADAALYQAKEHGRNRTECW 487
             + +TVSIGV+        ++ L+K AD ALY+AK  G+NR E +
Sbjct: 201 EKLRVTVSIGVS-TYRGHESLEELIKEADQALYEAKRKGKNRVEVF 245