BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0029.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20215 [K] COG4977 Transcriptional regulator containing an ami... 357 3e-98 CC2960 Non COG 292 7e-79 mll5195 [K] COG4977 Transcriptional regulator containing an amid... 219 6e-57 PA1850 [K] COG4977 Transcriptional regulator containing an amida... 187 3e-47 PA3782 [K] COG4977 Transcriptional regulator containing an amida... 155 1e-37 >SMb20215 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Sme Sinorhizobium meliloti Length = 326 Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 181/314 (57%), Positives = 232/314 (73%), Gaps = 2/314 (0%) Query: 1 MHRVGFIVPQRFQLMSLAALTAFEIVNLPPADQRYDIHLLSEHGGPVRSSSGMTLQTEPF 60 MHR+GF+V RFQLM AA+TAFE+ NL + Y+I LLSE GG V+SS+G + T+ F Sbjct: 12 MHRIGFVVFPRFQLMGFAAVTAFEMANLALGETVYEIELLSEAGGEVKSSAGFGVLTKTF 71 Query: 61 GDPAFDTVIVGSITEMDMPSSDATTIAFVQAAAKASRRVASICSGAFVLAEAGLLSGRRA 120 A+DTV+ G+ +++ P + + F + + + +RRVA+ C+GAFVLAE+GLL GRRA Sbjct: 72 DHTAYDTVMFGAGVQIE-PMTPGL-VEFARRSFETARRVAAPCTGAFVLAESGLLDGRRA 129 Query: 121 TMHWAHAASFRARFPNVRAEEDRIFINDGPVWTSAGMTAGIDLVLALIDNDLGPEVAKMV 180 T HWA A + RFP V+ EEDRIFI DG VWTSAGMTA IDL LA+++ D G VA+ V Sbjct: 130 TTHWAFARQLQDRFPAVKVEEDRIFIVDGSVWTSAGMTASIDLALAMVEKDYGQGVARSV 189 Query: 181 ARLLVMNQRRMGGQKQHSALLDMTPKSDRIELVLAHIRQNLRNPLTIEELAAVANLSPRQ 240 AR LV+ RR GGQ Q SALL++ PKSDRI+ + + + NLR L++EELA A LS RQ Sbjct: 190 ARKLVVYHRRAGGQSQFSALLELEPKSDRIQRSIDYAKANLRRGLSVEELADAAGLSARQ 249 Query: 241 FSRAFLAETGQSPAKAVERLRLEAARFMIEEGRHTVNVVAQETGFVDRERMRRAFLRTFG 300 FSRAF AETGQSPAKAVE LR+EAAR M+E+GRH+++V+A+ETGF +RMRRAFLRT G Sbjct: 250 FSRAFRAETGQSPAKAVETLRVEAARLMMEQGRHSMDVIAEETGFAIADRMRRAFLRTLG 309 Query: 301 VPPEILRRNARREA 314 PP+ +RRNAR A Sbjct: 310 QPPQTIRRNARESA 323 >CC2960 Non COG Length = 312 Score = 292 bits (748), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 157/308 (50%), Positives = 210/308 (68%), Gaps = 7/308 (2%) Query: 4 VGFIVPQRFQLM-SLAALTAFEIVN-LPPADQRYDIHLLSEHGGPVRSSSGMTLQTEPFG 61 +GF+V FQL+ + + AFEI L P Y +H LS GG + S+SGM +QT+ Sbjct: 5 IGFLVYPGFQLLDATGPIAAFEIAGRLAPGA--YSLHFLSLRGGLIPSTSGMVVQTKALA 62 Query: 62 D-PAFDTVIVGSITEMDMPSSDATTIAFVQAAAKASRRVASICSGAFVLAEAGLLSGRRA 120 + P DT+++ + +P+S T+AFV+ A +++RRVAS+CSG +VLAEAGLL G+RA Sbjct: 63 EAPPLDTLLIAGGDAVKVPASCPETLAFVRQAGRSARRVASVCSGTYVLAEAGLLDGKRA 122 Query: 121 TMHWAHAASFRARFPNVRAEEDRIFINDGPVWTSAGMTAGIDLVLALIDNDLGPEVAKMV 180 T HW+ F+ R+P+VR E DRI+I DG VW+SAG+TAGIDL LALI D G VA+ Sbjct: 123 TTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEGEAVARRT 182 Query: 181 ARLLVMNQRRMGGQKQHSALLDMTPKSDRIELVLAHIRQNLRNPLTIEELAAVANLSPRQ 240 A+ LV+ R GGQ QHSAL+D+ P R + +L+ RQNL PL++E+LA A +SPR Sbjct: 183 AQQLVVYHHRPGGQSQHSALIDLRP--GRFDGLLSWARQNLSEPLSVEQLADRAAMSPRN 240 Query: 241 FSRAFLAETGQSPAKAVERLRLEAARFMIEEGRHTVNVVAQETGFVDRERMRRAFLRTFG 300 F+R F ETG +PAKA+ERLR+EAAR +++ V VA ETGF D ERMRRAF+R FG Sbjct: 241 FARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVEDVALETGFGDPERMRRAFIRAFG 300 Query: 301 VPPEILRR 308 PP+ LRR Sbjct: 301 QPPQALRR 308 >mll5195 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Mlo Mesorhizobium loti Length = 325 Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 122/270 (45%), Positives = 172/270 (63%), Gaps = 5/270 (1%) Query: 3 RVGFIVPQRFQLMSLAA-LTAFEIVNLPPADQRYDIHLLSEHGGPVRSSSGMTLQTEPFG 61 +VG I+ FQL+ A AFE+ Y + +L+ G + SSSGM L P Sbjct: 34 KVGIIIHPGFQLLDAAGPAAAFELAEGFCVGS-YMLEILAPGGEEIESSSGMRLAARPLS 92 Query: 62 -DPAFDTVIVGSITEMDMPSSDATTIAFVQAAAKASRRVASICSGAFVLAEAGLLSGRRA 120 + DT I+ + ++ +A+++ RR AS+C+GA++LAEAGLL GRRA Sbjct: 93 MEEPLDTAIISGGEIIRSMAAAQEIVAWLRR--TGVRRTASVCTGAYLLAEAGLLDGRRA 150 Query: 121 TMHWAHAASFRARFPNVRAEEDRIFINDGPVWTSAGMTAGIDLVLALIDNDLGPEVAKMV 180 T HW F R+P V+ + +RIF+ DG VWTSAG++AGIDL LALI++DLGP +A+ V Sbjct: 151 TTHWWSTHDFARRYPAVKLDAERIFVRDGSVWTSAGISAGIDLALALIEDDLGPAIARRV 210 Query: 181 ARLLVMNQRRMGGQKQHSALLDMTPKSDRIELVLAHIRQNLRNPLTIEELAAVANLSPRQ 240 A+ LV++QRR GGQ Q SAL+++ ++ R ++ +R L PLT+E LA A +SPR Sbjct: 211 AQQLVVHQRRPGGQSQFSALVELGGRTGRFIELIEWMRTALAQPLTVECLADRAAMSPRH 270 Query: 241 FSRAFLAETGQSPAKAVERLRLEAARFMIE 270 F+RAF AETG +PAKAVER+RLE+AR +E Sbjct: 271 FARAFKAETGTTPAKAVERIRLESARIAVE 300 >PA1850 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 334 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 15/290 (5%) Query: 27 NLPPADQRYDIHLLSEHGGPVRSSSGM----TLQTEPFGDPAFDTVIVGSITEMDMPSSD 82 LPP Y I +L E V SS+G+ L + DT++V ++ + + Sbjct: 38 GLPPF---YRIQVLGERSEAVPSSAGIRICADLAWRDCPPESLDTLLVPGGLGVEAQTRN 94 Query: 83 ATTIAFVQAAAKASRRVASICSGAFVLAEAGLLSGRRATMHWAHAASFRARFPNVRAEED 142 A +A+++AA RR+ S+CSGA +LA AG+L GR AT HWA A+ R FP V + D Sbjct: 95 ADLLAWLKAAEPCIRRLGSVCSGALILAAAGVLDGRPATTHWADVATLRQGFPGVHVQGD 154 Query: 143 RIFI-------NDGPVWTSAGMTAGIDLVLALIDNDLGPEVAKMVARLLVMNQRRMGGQK 195 R+ D ++TSAG+TAGIDL LAL++ DLG +A VAR LVM +R GGQ Sbjct: 155 RLHTYDPRCRDGDAHIFTSAGVTAGIDLALALVEADLGRSLALSVARRLVMFLKRPGGQA 214 Query: 196 QHSALLDMTP-KSDRIELVLAHIRQNLRNPLTIEELAAVANLSPRQFSRAFLAETGQSPA 254 Q SA L P ++ R+ +L I NL L++E LA A +SPR SR FL E G +P Sbjct: 215 QFSAWLTPEPSRTPRLAALLEWIPANLAGDLSLEALADQACMSPRTLSRVFLQELGVAPG 274 Query: 255 KAVERLRLEAARFMIEEGRHTVNVVAQETGFVDRERMRRAFLRTFGVPPE 304 + VER+RLEAAR ++++ + ++ V++ GF E +RR F + V P+ Sbjct: 275 RYVERVRLEAARALLQDAQASIATVSRLCGFGHPENLRRTFHKHLSVSPQ 324 >PA3782 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Pae Pseudomonas aeruginosa Length = 317 Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 149/283 (52%), Gaps = 6/283 (2%) Query: 30 PADQRYDIHLLSEHGGPVRSSSGMTLQTEPFGDPAF---DTVIVGSITEMDMPSSDATTI 86 P Q +D+ + + G +R++ G T++ E G A TVIV S + A Sbjct: 33 PCAQAFDLRVCTAEPGRLRTTVGFTIEAEA-GLEALAEAQTVIVPSWRDPHERPPQALLD 91 Query: 87 AFVQAAAKASRRVASICSGAFVLAEAGLLSGRRATMHWAHAASFRARFPNVRAEEDRIFI 146 A + A A+ ++ V +C GAFVLAEAGLL GRRAT HW A F RFP VR E D ++I Sbjct: 92 ALIAARARGAQLVG-LCLGAFVLAEAGLLDGRRATTHWMWAEDFAGRFPAVRVEPDVLYI 150 Query: 147 NDGPVWTSAGMTAGIDLVLALIDNDLGPEVAKMVARLLVMNQRRMGGQKQH-SALLDMTP 205 D + TSAG AGID L L+ LG + +AR LV+ R GGQ Q L + Sbjct: 151 EDDGLLTSAGTVAGIDCCLHLVRQRLGAQTTNHLARRLVVAPHRQGGQAQFIEQPLPDSA 210 Query: 206 KSDRIELVLAHIRQNLRNPLTIEELAAVANLSPRQFSRAFLAETGQSPAKAVERLRLEAA 265 + R+ +L +RQNL +++ LA +S R F+R F TG + ++ ++ RL A Sbjct: 211 QDGRLGELLVWLRQNLDQAHSLDSLAQRVLMSRRTFTRHFRQLTGTTVSQWLQAERLALA 270 Query: 266 RFMIEEGRHTVNVVAQETGFVDRERMRRAFLRTFGVPPEILRR 308 + ++E H+V +A GF +R+ F FG+PP RR Sbjct: 271 QRLLETTEHSVQAIAGLAGFGSAVSLRQQFSAAFGLPPLGYRR 313