BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0005.p (531 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6574 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 613 e-175 SMa1131 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 562 e-160 CC0811 Non COG 464 e-130 PA3614 [J] COG1236 Predicted exonuclease of the beta-lactamase f... 322 1e-87 RSc0201 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 268 3e-71 >mlr6574 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 535 Score = 613 bits (1581), Expect = e-175, Method: Compositional matrix adjust. Identities = 303/526 (57%), Positives = 381/526 (72%), Gaps = 2/526 (0%) Query: 4 TVQFCGAARTVTGSCYLFDTPTGRLLVDCGLFQGPKTLKGLNYAPFPFPAEEIGAVLLTH 63 ++F GAA VTGSC+ +TP R+L+DCGLFQG K+ + LNY FPFP+E I AV+LTH Sbjct: 8 VLRFHGAAHGVTGSCHEIETPHSRILIDCGLFQGSKSERELNYGQFPFPSEAIDAVILTH 67 Query: 64 AHIDHSGLLPKLRREGFSGPIMATRGTIDLCSYMLPDAGNIQEAEVAALNRRNTARGRDE 123 AHIDHSGLL KL ++GFSGPI TR TIDLCS MLPDA ++QE EV LNRRN RGR Sbjct: 68 AHIDHSGLLAKLVKQGFSGPIHTTRATIDLCSVMLPDAAHVQEMEVEQLNRRNAQRGRPP 127 Query: 124 VKPIYTQADAIATLDAFRPVEYRTWFEAMPGVRARYWNAGHLLGSASIEIEFAGQGAGGM 183 V+PIY+ +DA A + FR VEY W G+R R+WNAGHLLGSAS+E+E Sbjct: 128 VEPIYSLSDAAACMTLFRAVEYGEWTTVAKGLRTRFWNAGHLLGSASVELEI-DLDHQKR 186 Query: 184 PLRVLASGDLGPDAKLLEPDPEAPAGFDYVISESTYGDGDRPATTASLRRAHLAQEVRDA 243 P+R+L SGD+GP KLL+ DPE PAG DY+I ESTYGD +RP + RR+ L VR A Sbjct: 187 PMRILFSGDIGPGHKLLQTDPEGPAGVDYLICESTYGDRERPDVSPEQRRSQLGDIVRRA 246 Query: 244 AAAKGALLIPAFAVERTQELIVDLVYLMERGEIPTAPIFLDSPLAIRATEVFRKHAASFD 303 A A G L+IP+FAVERTQEL+VDL LM+ GE+ TAP+F+DSPLA RA+ +F +HA + Sbjct: 247 AEAGGPLIIPSFAVERTQELLVDLYLLMQAGEVLTAPVFVDSPLATRASAIFERHANDIE 306 Query: 304 AEVDVDRLLASPQLRFTETVDESKSIARLSGFHIIIAASGMCEAGRIRHHLKRWLWRREA 363 + + L S +LRFTETV++SK+I RLSGF ++IAASGMC+AGRIRHHLK LWRR A Sbjct: 307 QGDVLRQALNSRELRFTETVEQSKAINRLSGFFVVIAASGMCDAGRIRHHLKANLWRRNA 366 Query: 364 TVLLVGFQAQGTLGRFLHDGAKAVRIQGDEVKVAARIRYLDEYSGHADGPELARWIASRR 423 TV++ G+QAQG+LGR L DGA+ VRIQG+EV+V ARI D YSGHAD EL W+ +R Sbjct: 367 TVMMAGYQAQGSLGRILLDGAQRVRIQGEEVEVKARISLFDLYSGHADAGELVAWVKART 426 Query: 424 PIHRGVFITHGEEPALKGLVERIAERTIPTASIFNPVLDDIYELSTAAPTPLDVVRRRRL 483 P+ + VF+THGEE L GL R+A IP + P LDD ++L+ P++V RRL Sbjct: 427 PVKQQVFLTHGEEAGLSGLRGRLAG-LIPDDKVIIPRLDDAFQLTPGRCLPVEVNEPRRL 485 Query: 484 APDAVVNLDWHNDMSRLLLDINEQIEAAADDRARGVIIRRLRRALE 529 P+ + LDWHND+SRLL+D+NE + AAAD+R R +IRR+RRALE Sbjct: 486 RPEKIARLDWHNDLSRLLMDVNEAVSAAADERGRAAVIRRMRRALE 531 >SMa1131 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 531 Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust. Identities = 298/528 (56%), Positives = 374/528 (70%), Gaps = 5/528 (0%) Query: 4 TVQFCGAARTVTGSCYLFDTPTGRLLVDCGLFQGPKTLKGLNYAPFPFPAEEIGAVLLTH 63 T++F GAA TVTGSC L + ++LVDCGLFQG KT K LNY FPF + I AV+LTH Sbjct: 6 TIRFDGAAGTVTGSCQLVEFGATKILVDCGLFQGSKTEKELNYRDFPFDPKTIDAVILTH 65 Query: 64 AHIDHSGLLPKLRREGFSGPIMATRGTIDLCSYMLPDAGNIQEAEVAALNRRNTARGRDE 123 AHIDHSGLLPKL R G+ GPI AT T DLCS MLPD+ +IQE+EV LNRRN RGR Sbjct: 66 AHIDHSGLLPKLARLGYDGPIFATPATTDLCSVMLPDSAHIQESEVDQLNRRNLRRGRQT 125 Query: 124 VKPIYTQADAIATLDAFRPVEYRTWFEAMPGVRARYWNAGHLLGSASIEIEFAGQGAGGM 183 V PIYT DA + FR V +W G+R R+WNAGHLLGSAS+E+E G G Sbjct: 126 VTPIYTPRDAAVAITLFRQVRLGSWETVGEGIRFRFWNAGHLLGSASVEMEI---GTGPS 182 Query: 184 PLRVLASGDLGPDAKLLEPDPEAPAGFDYVISESTYGDGDRPATTASLRRAHLAQEVRDA 243 PLR+L SGD+GP KLL+ D +AP+G+DYVI ESTYG+ +R + RR L EV A Sbjct: 183 PLRLLFSGDIGPRHKLLQFDAKAPSGWDYVICESTYGNIEREEADDAARRHILRSEVLTA 242 Query: 244 AAAKGALLIPAFAVERTQELIVDLVYLMERGEIPTAPIFLDSPLAIRATEVFRKHAASFD 303 A GALLIP+FAVERTQEL+ DLV+LME G +P PI +DSPLA RA+E+FR+HA + Sbjct: 243 AHPNGALLIPSFAVERTQELLTDLVHLMETGAVPKCPIIIDSPLATRASEIFRRHARELE 302 Query: 304 AEVDVDRLLASPQLRFTETVDESKSIARLSGFHIIIAASGMCEAGRIRHHLKRWLWRREA 363 + R + S +RFTET ++SK++ + GFHI+IAASGMCEAGRIRH LK WLWR EA Sbjct: 303 NGDALVRGIESKNVRFTETAEQSKAVDLIRGFHIVIAASGMCEAGRIRHRLKNWLWRDEA 362 Query: 364 TVLLVGFQAQGTLGRFLHDGAKAVRIQGDEVKVAARIRYLDEYSGHADGPELARWIASRR 423 TVLLVG+QA GTLGR L +GA VRIQGD+++V ARIR LD YSGHADG ELA W+ +R+ Sbjct: 363 TVLLVGYQANGTLGRLLEEGATVVRIQGDDIRVRARIRKLDIYSGHADGSELADWVRARQ 422 Query: 424 PIHRGVFITHGEEPALKGLVERIAERTIPTASIFNPVLDDIYELSTAAPTPL-DVVRRRR 482 PI GVF+ HGE+ AL+G+ ER++ +P + P LD + L + + + V R Sbjct: 423 PISAGVFLVHGEDEALEGIRERLST-FLPQDHLIRPRLDSAFRLGSHGAVQISEAVAPPR 481 Query: 483 LAPDAVVNLDWHNDMSRLLLDINEQIEAAADDRARGVIIRRLRRALEQ 530 + P V DWHND+ +L+LD+ +++ AADD+ARGV+IRRLRRAL++ Sbjct: 482 IDPVRVGRTDWHNDIQKLVLDLQDELAKAADDKARGVVIRRLRRALQE 529 >CC0811 Non COG Length = 530 Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust. Identities = 270/531 (50%), Positives = 337/531 (63%), Gaps = 6/531 (1%) Query: 1 VSITVQFCGAARTVTGSCYLFDTPTGRLLVDCGLFQGPKTLKGLNYAPFPFPAEEIGAVL 60 ++I++ F GAA VTG C TP +L+DCG+FQG KTLK LNY PFPF A ++ AVL Sbjct: 1 MTISLTFHGAAGCVTGFCARLVTPRTTVLIDCGMFQGSKTLKALNYQPFPFDAGQVDAVL 60 Query: 61 LTHAHIDHSGLLPKLRREGFSGPIMATRGTIDLCSYMLPDAGNIQEAEVAALNRRNTARG 120 LTHAHIDHSGLLPKL GF GPI AT T DL + ML DAG IQE EV +LNRRN RG Sbjct: 61 LTHAHIDHSGLLPKLMLAGFEGPIYATAATRDLGAVMLVDAGGIQENEVESLNRRNLRRG 120 Query: 121 RDEVKPIYTQADAIATLDAFRPVEYRTWFEAMPGVRARYWNAGHLLGSASIEIEFAGQGA 180 V+PIYT+ D FR V+ + A +W AGH+LG+ASI ++ G Sbjct: 121 FPPVEPIYTERDGERVAKQFRKVKLGEPVRIAEDIVATWWPAGHMLGAASIALDV---GP 177 Query: 181 GGMPLRVLASGDLGPDAKLLEPDPEAPAGFDYVISESTYGDGDRPATTASLRRAHLAQEV 240 G R+L SGDLGP DP+APAG D++I ESTYGD DR ++ R+ LA+EV Sbjct: 178 EGQAKRILFSGDLGPGGSPFLDDPDAPAGIDHLILESTYGDRDRTGIDSAARKQQLAEEV 237 Query: 241 RDAAAAKGALLIPAFAVERTQELIVDLVYLMERGEIPTAPIFLDSPLAIRATEVFRKHAA 300 R A AA G LLIPAFAVER+QEL++DL+ LM++GE+P IFLDSPLAI AT+VF++ Sbjct: 238 RAAHAAGGPLLIPAFAVERSQELLIDLLDLMDQGEVPRGDIFLDSPLAIEATKVFQERGW 297 Query: 301 SFDAEVD-VDRLLASPQLRFTETVDESKSIARLSGFHIIIAASGMCEAGRIRHHLKRWLW 359 + + + + L S LRF ++ ES + RL G+H+I+AASGMC+AGR+R HL+R LW Sbjct: 298 NPQTQTNPFEALRPSQHLRFLDSPAESDGLDRLKGWHVILAASGMCDAGRVRKHLQRLLW 357 Query: 360 RREATVLLVGFQAQGTLGRFLHDGAKAVRIQGDEVKVAARIRYLDEYSGHADGPELARWI 419 RREATVLL G+QA GTLGR L DG V I+GDE+ V ARIR LD YSGHAD L RW Sbjct: 358 RREATVLLCGYQATGTLGRLLADGRNRVTIRGDEISVRARIRQLDAYSGHADAAGLVRWA 417 Query: 420 ASRRPIHRGVFITHGEEPALKGLVERIAERTIPTASIFNPVLDDIYEL-STAAPTPLDVV 478 R PI VF+ HGE A +GL R+ E P + P LD+ + L A P+ Sbjct: 418 KDRLPITGSVFLAHGEPDATEGLRRRLVEADFPAERLVIPALDEGFALDGVGAAQPIGEA 477 Query: 479 RRRRLAPDAVVNLDWHNDMSRLLLDINEQIEAAADDRARGVIIRRLRRALE 529 R RL A LDWHN L + + + AA DDRAR +++ L LE Sbjct: 478 -RPRLPAAAPGKLDWHNQRVAFQLALGQALAAAPDDRAREALLKALSATLE 527 >PA3614 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Pae Pseudomonas aeruginosa Length = 467 Score = 322 bits (825), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 195/472 (41%), Positives = 262/472 (55%), Gaps = 29/472 (6%) Query: 4 TVQFCGAARTVTGSCYLFDTPTG-RLLVDCGLFQGPKTLKGLNYAPFPFPAEEIGAVLLT 62 ++ F GAA+ VTGSCYL +T G ++L++CG+ QG + N APFPF I AV+++ Sbjct: 3 SLTFLGAAQEVTGSCYLLETLDGVKVLLECGMRQGRREADNGNRAPFPFDPASIDAVVIS 62 Query: 63 HAHIDHSGLLPKLRREGFSGPIMATRGTIDLCSYMLPDAGNIQEAEVAALNRRNTARGRD 122 HAH+DHSGLLP+L EGF GPI AT T +L ML D+ +IQE + NR G+ Sbjct: 63 HAHLDHSGLLPRLAAEGFKGPIFATEATCELLELMLLDSAHIQEKDAEWENRWRNRIGKP 122 Query: 123 EVKPIYTQADAIATLDAFRPVEYRTWFEAMPGVRARYWNAGHLLGSASIEIEFAGQGAGG 182 +KP+YTQAD L RP+ + GVR + NAGH+LGS+ +E++F Q Sbjct: 123 SIKPLYTQADTERALKLRRPISLGSTVAVARGVRVTFHNAGHILGSSIVEVQFHDQ---V 179 Query: 183 MPLRVLASGDLGPDAKLLEPDPEAPAGFDYVISESTYGDGDRPATTASLRR--AHLAQEV 240 P R++ SGDLG L P + D V+ ESTYGD D + +L A L Q Sbjct: 180 QPRRLVFSGDLGNTCSPLMRAPSPLSRADVVMLESTYGDRDHRDSNDTLEELAAILDQAH 239 Query: 241 RDAAAAKGALLIPAFAVERTQELIVDLVYLMERGEIPTAPIFLDSPLAIRATEVFRKHAA 300 RD G +LIP+FAV RTQ+L+ L + G +P +FLDSP+A RA ++ +H+ Sbjct: 240 RDG----GNVLIPSFAVGRTQDLLYYLGRFYQEGRLPQQAVFLDSPMAARANGIYLRHSN 295 Query: 301 SFDAEVDVDRLLAS-----------PQLRFTETVDESKSIARLSGFHIIIAASGMCEAGR 349 FD D DR P LR T + DES +I R+ +IIA SGMC GR Sbjct: 296 EFD---DRDREYIRGTGTTRLEEWLPVLRVTRSADESMAINRIKSGAVIIAGSGMCTGGR 352 Query: 350 IRHHLKRWLWRREATVLLVGFQAQGTLGRFLHDGAKAVRIQGDEVKVAARIRYLDEYSGH 409 I HH K LWR E V+ GFQA+GTLGR + DGA AVR+ + V A+I L +S H Sbjct: 353 IVHHFKHNLWRPECHVVFPGFQARGTLGRNIVDGASAVRVFHQRIAVKAQIHTLGGFSAH 412 Query: 410 ADGPELARWIA--SRRPIHRGVFITHGEEPALKGLVERIAERTIPTASIFNP 459 A +L W+ + RP +++ HGE ++ L I ER A I P Sbjct: 413 AGQSQLLDWVGHFAHRP---ALYLIHGEREKMEALQSAIRERLDWDAEIPEP 461 >RSc0201 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Rso Ralstonia solanacearum Length = 452 Score = 268 bits (684), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 169/446 (37%), Positives = 234/446 (52%), Gaps = 16/446 (3%) Query: 3 ITVQFCGAARTVTGSCYLFDTPTGRLLVDCGLFQGPKTLKGLNYAPFPFPAEEIGAVLLT 62 + +QF GA TVTGS Y+ +T R++VDCGLFQG K+L+ N+ I AV+LT Sbjct: 1 MQLQFLGATETVTGSKYVLETGARRVMVDCGLFQGYKSLRLRNWDTLAVNPHHIDAVVLT 60 Query: 63 HAHIDHSGLLPKLRREGFSGPIMATRGTIDLCSYMLPDAGNIQEAEVAALNRRNTARGRD 122 HAHIDHSG LP L R GF GP+ T+GT +LC+ +LPD+ + + N + +R Sbjct: 61 HAHIDHSGYLPLLVRNGFRGPVYCTKGTAELCNILLPDSARLAVEDAQYANAQGFSRHHP 120 Query: 123 EVKPIYTQADAIATLDAFRPVEYRTWFEAMPGVRARYWNAGHLLGSASIEIEFAGQGAGG 182 + P+Y + DA L PV Y F + GV A + AGH++G+A++ + G+ Sbjct: 121 AL-PLYDEQDAAKALRRLHPVGYGERFSVVDGVEAEFHRAGHIIGAATVTLLAEGR---- 175 Query: 183 MPLRVLASGDLGPDAKLLEPDPEAPAGFDYVISESTYGDGDRPATTASLRRAHLAQEVRD 242 R + SGDLG + PE A D ++ ESTYGD P L + V Sbjct: 176 ---RTVFSGDLGRQVDPVMRPPEPVAEADTLLVESTYGDRLHPPGDPL---DELERIVHR 229 Query: 243 AAAAKGALLIPAFAVERTQELIVDLVYLMERGEIPTAPIFLDSPLAIRATEVFRKHAASF 302 G LLIPAFAV RTQ L+ L L+ IP PI+LDSP+A RATEVF +H Sbjct: 230 TIEQGGTLLIPAFAVGRTQALLFCLYTLIRTHRIPHVPIYLDSPMAERATEVFARHVEEL 289 Query: 303 DAEVDVDRLLASPQLRFTETVDESKSIARLSGFHIIIAASGMCEAGRIRHHLKRWLWRRE 362 + + + + ++ +S + II+AASGM GR+ HHLK + + Sbjct: 290 HIDAADCQAACALAVP-VQSPQQSMHLGNDRAPKIILAASGMATGGRVLHHLKSFGGGKR 348 Query: 363 ATVLLVGFQAQGTLGRFLHDGAKAVRIQGDEVKVAARIRYLDEYSGHADGPELARWIA-- 420 +L+ GFQA GT G L G + +R+ G E+ + A + + S HAD EL W+ Sbjct: 349 NAILMSGFQAAGTRGAALLAGQRQLRVHGREIAIRATVEQIANLSAHADANELMAWLRGF 408 Query: 421 SRRPIHRGVFITHGEEPALKGLVERI 446 SR P FI HGE A L +RI Sbjct: 409 SRAP--EQTFIVHGEPAASDALRQRI 432