BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0014.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0185 [T] COG0589 Universal stress protein UspA and related nu...    92   2e-19
mlr6608 [T] COG0589 Universal stress protein UspA and related nu...    87   1e-17
SMa1158 [T] COG0589 Universal stress protein UspA and related nu...    87   1e-17
BMEI0938 [T] COG0589 Universal stress protein UspA and related n...    86   2e-17
SMa1231 [T] COG0589 Universal stress protein UspA and related nu...    84   1e-16

>RSc0185 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 279

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 9/125 (7%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSS----SELAKNLSRHGID 56
           VAW+  R +ARA+ DA+P++++A  VY+  +  +   P +R+     S++A+ L  +GID
Sbjct: 158 VAWNGGRESARALHDAVPLMQEA-TVYVLQMIDDH--PHQRAEETTISQVARALLTYGID 214

Query: 57  VIVEEVDAAGR--AIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIP 114
             VEE    G   AIG++L ++      +L+V G YGHSRLRE VLGG TR++L    +P
Sbjct: 215 STVEEAHCVGSDVAIGEMLLSRAADFNADLIVTGAYGHSRLRELVLGGVTRTLLNTMTVP 274

Query: 115 VLFSH 119
           VL SH
Sbjct: 275 VLMSH 279


>mlr6608 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Mlo Mesorhizobium loti
          Length = 269

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAW  +R A RA++DA+P L KA EV I T+ +E+    R S +++A  L  HGI    E
Sbjct: 153 VAWKDTREARRAMADALPFLAKASEVVIATIDTERGESIRDSLADVAVFLEHHGIKARTE 212

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
            +  AG A GD L T   S   +L+V G YGHSRLRE+  GG TR+++    I    S+
Sbjct: 213 LI--AGEADGDRLLTFARSMHADLIVSGAYGHSRLREWAFGGVTRTLIEERGINRFMSY 269


>SMa1158 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Sme Sinorhizobium meliloti
          Length = 304

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 70/119 (58%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           +AWD S  AAR+ +DA+P L  A  V +  V+ EK +P+  + S+ A +LSRHG+ V  +
Sbjct: 186 LAWDGSGRAARSAADALPFLRAAEAVEVVAVSGEKDLPATPTCSDAALHLSRHGVHVKAQ 245

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
            +      + + L         +L+VMGGY HSRLRE V GG T+S+L   P+P+  ++
Sbjct: 246 TLPVLNGDVAETLRKHAMLIHADLIVMGGYVHSRLRELVFGGVTQSLLKQSPVPLFMAY 304


>BMEI0938 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 281

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRS--SSELAKNLSRHGIDVI 58
           VA++  R AARA  DA+P++++A    I  +   +      +   SELA+ L+RHG+ V 
Sbjct: 161 VAFNGKREAARAAFDALPLIKQAGRTEIIWIDPPEAEGEDETLGGSELAEALARHGVGVE 220

Query: 59  VEEVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFS 118
           V  + + GR   D L   + + R +LLVMG Y HSRLRE V GG TRS+L + PI  LF+
Sbjct: 221 VLALASQGRHAQDALREHLIAERADLLVMGAYSHSRLRELVFGGVTRSLLNDLPILTLFA 280


>SMa1231 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Sme Sinorhizobium meliloti
          Length = 274

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 72/117 (61%), Gaps = 1/117 (0%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           +AW+ +  +ARA  +++ +++ A  V++  V   KT        ++A  L+RHG+ V V+
Sbjct: 157 LAWNSTIESARAARESLDMMQNAEGVHLVLV-DPKTKNGEEPGVDVATYLARHGVKVAVD 215

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLF 117
           ++ +AGR + +VLA        +L+V+G YGHSR+RE V GG T+S++  P +PVL 
Sbjct: 216 QLASAGRPVEEVLAQHARDTSADLIVIGAYGHSRIRERVFGGVTKSMIDAPMLPVLM 272