BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0011.p         (211 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1012 [L] COG0582 Integrase Bme Brucella melitensis                 75   1e-13
AGc767 [L] COG0582 Integrase Atu Agrobacterium tumefaciens strai...    74   2e-13

>BMEI1012 [L] COG0582 Integrase Bme Brucella melitensis
          Length = 336

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 2/133 (1%)

Query: 7   EPGTPDFVRLYSEAIAAKPNKGAETFSSLIDYFKDQSEYKGLGDKSKRAYDQYLALIEAK 66
           EPG+ +F+    EA  ++    A  F ++I  +K   +Y+ L D +KR ++ +L  I  K
Sbjct: 27  EPGSAEFMASLQEANDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKK 86

Query: 67  FGAMPLGAIE-DRRARGDFKAFRNTFASRPRKADYVWTTTARVLSVAKD-HGKIAVNVCE 124
           FG + +   +  ++ R   + +R  FA +PR ADY     +RVLS A D  GKI+ N CE
Sbjct: 87  FGDLSITQFDLPQKIRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCE 146

Query: 125 RGGRLYESDRSEI 137
              +LY++DR+ I
Sbjct: 147 GIKQLYKNDRAAI 159


>AGc767 [L] COG0582 Integrase Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 349

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 3   RIDAEPGTPDFVRLYSEAIAAKPNKGAETFSSLIDYFKDQSEYKGLGDKSKRAYDQYLAL 62
           R+D  PGT  F+  Y+EAIA +    +  F S+I ++K  +E+K L D +KR +  ++  
Sbjct: 35  RLDGHPGTAAFMASYNEAIANRMEPESGRFRSIITHYK-ATEFKKLADSTKRVWSPWIDR 93

Query: 63  IEAKFGAMPLGAIE-DRRARGDFKAFRNTFASRPRKADYVWTTTARVLSVAKD-HGKIAV 120
           I   FG + +       + R   + +R  ++  PR AD      +R+LS   D  GK++ 
Sbjct: 94  ISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDTPRAADTGMQVLSRILSHGVDPMGKLSA 153

Query: 121 NVCERGGRLYESDRSEI 137
           N  E    LY SDRSEI
Sbjct: 154 NPAEGIKHLYSSDRSEI 170