BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0008.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7724 [NU] COG3188 P pilus assembly protein, porin PapC Mlo Me... 283 3e-76 AGl299 [NU] COG3188 P pilus assembly protein, porin PapC Atu Agr... 199 5e-51 RSp1498 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ra... 119 5e-27 PA4652 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pse... 116 5e-26 YPO1696 [NU] COG3188 P pilus assembly protein, porin PapC Ype Ye... 100 3e-21 >mll7724 [NU] COG3188 P pilus assembly protein, porin PapC Mlo Mesorhizobium loti Length = 807 Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 144/239 (60%), Positives = 177/239 (74%) Query: 1 VTDAMKSERLETGSYGARVRDSEGSIPDRSATASYRASFGRVEVGVQQYGSNTRATAQID 60 V D KSERLE GS G R R SEG P+RSA SYR+ RVE G+QQ+ + R TA++D Sbjct: 568 VADIAKSERLENGSIGWRARTSEGGTPNRSAAVSYRSPRARVETGIQQFDKSVRGTAEVD 627 Query: 61 GSIAFAGGGVFFGNRIDDAFAVVNAGAPNVAVQYENRPVGVTDSRGLLLVPYLNSYQKNK 120 G+IA AGGG+F NRIDDAFAVV+ G V VQ++NRPVGV++ +G +LVP LNSY+ N Sbjct: 628 GAIAVAGGGIFATNRIDDAFAVVDVGVAGVEVQHQNRPVGVSNRQGRILVPDLNSYEDNT 687 Query: 121 ISIDPKNLPVDADVPSTREVVVPADRSGVVVNFGISETPKAALVTFTDSKGKPLAVGAQG 180 ISIDP+NLPVDADVP TR++VVPA RSGVV++FG+S+ AALV+ D KG P+AVGA+G Sbjct: 688 ISIDPRNLPVDADVPETRKIVVPAGRSGVVLDFGVSKAADAALVSLVDGKGTPIAVGAKG 747 Query: 181 HLESGKQTFVIGYDGQGYISGLTDQNVATIDLPDGSSCRAAFGYAPKPGEQVAIKDVIC 239 +E + FVIGYDG+ YI L QN I+LPDG+SCRA F Y PG+QV IK VIC Sbjct: 748 RVEGADEEFVIGYDGEAYIRTLHRQNAVAIELPDGTSCRAEFAYRAIPGQQVVIKQVIC 806 >AGl299 [NU] COG3188 P pilus assembly protein, porin PapC Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 812 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 2/238 (0%) Query: 3 DAMKSERLETGSYGARVRDSEGSIPDRSATASYRASFGRVEVGVQQYGSNTRATAQIDGS 62 + +KSE GSYG R+R + G SA+ SYR + RV G+ Q+ T+A AQI+GS Sbjct: 574 EVVKSEEQAEGSYGWRLRGALGGNDIASASGSYRGTAARVSAGIDQFNRTTQAYAQIEGS 633 Query: 63 IAFAGGGVFFGNRIDDAFAVVNAGAPNVAVQYENRPVGVTDSRGLLLVPYLNSYQKNKIS 122 IA AGG VF GNRIDDAFAVV+AGAP V + ENRP+G T+ RG +L+P L SY N I+ Sbjct: 634 IAVAGGDVFIGNRIDDAFAVVDAGAPGVDILLENRPIGQTNRRGKILLPNLRSYDVNNIT 693 Query: 123 IDPKNLPVDADVPSTREVVVPADRSGVVVNFGISETPKAALVTFTDSKGKPLAVGAQGHL 182 +DP NLPVDA + T++ V P +R+G VVNF + + ALVT G + G+ G + Sbjct: 694 LDPSNLPVDARIDHTKQTVRPTERAGAVVNFKVETEGQVALVTLKAESGDFIETGSTGTI 753 Query: 183 ESGKQTFVIGYDGQGYISGLTDQNVATIDLPDGSSCRAAFGYAPKPGEQVAIKDVICQ 240 + GK+ F++GYDGQ Y+ + + I P C A P G + A + +C+ Sbjct: 754 D-GKREFIVGYDGQAYLDNIGATHRLHITQPTRGKCEAEI-IVPTAGAERATLETLCR 809 >RSp1498 [NU] COG3188 P pilus assembly protein, porin PapC Rso Ralstonia solanacearum Length = 786 Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 13 GSYGARVRDSEGSIPDRS-ATASYRASFGRVEVGVQQYGSNTRATAQID--GSIAFAGGG 69 G +G +++ RS A +YR +G VQ+ N +A+ +D GS+ G Sbjct: 553 GGFGWQLQSGRSGAQRRSLAQVNYRGRYGDAFAAVQEI--NGQASTALDAAGSLVLMDGA 610 Query: 70 VFFGNRIDDAFAVVNA-GAPNVAVQYENRPVGVTDSRGLLLVPYLNSYQKNKISIDPKNL 128 V G RI+DAFA+V G +V V +ENR +G T+++G LLVP L +Y+ N+++IDP L Sbjct: 611 VLPGRRINDAFALVTTEGMADVPVTFENRLMGRTNAQGHLLVPDLVAYENNRVAIDPLAL 670 Query: 129 PVDADVPSTREVVVPADRSGVVVNFGISETPKAALVTFTDSKGKPLAVGAQGHLESGKQT 188 P++A + ++ + P DRSGV+V+F + ET + A + D+ +PL G+ L Sbjct: 671 PINARLAASAATLAPTDRSGVLVHFHV-ETFRGAQLRLVDALEQPLPAGSHATLARTGAR 729 Query: 189 FVIGYDGQGYISGLTDQNVATIDLPDGSSCRAAFGYAPKPGEQVAIKDVICQ 240 + IGYDG +I L +++ +D D C A Y G + + C Sbjct: 730 YPIGYDGLAFIDALETEDIVRVDDVD-PPCAAHVVYPADAGALPTLGPLRCM 780 >PA4652 [NU] COG3188 P pilus assembly protein, porin PapC Pae Pseudomonas aeruginosa Length = 790 Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 2/195 (1%) Query: 29 RSATASYRASFGRVEVGVQQYGSNTRATAQIDGSIAFAGGGVFFGNRIDDAFAVVNA-GA 87 + A ++R +++ G+ N A + GS+ + VF NRI+DAF +V+ G Sbjct: 572 QQADLTWRMQNVQLQGGLYGETGNYTRWADLSGSLVWMDNAVFASNRINDAFVLVSTKGY 631 Query: 88 PNVAVQYENRPVGVTDSRGLLLVPYLNSYQKNKISIDPKNLPVDADVPSTREVVVPADRS 147 P V ++YEN+ +G TD G LLVP++ +Y K I+P +LP + P + V S Sbjct: 632 PQVPIRYENQLMGSTDDNGHLLVPWVAAYYPAKFQIEPLDLPANVSAPEVEQRVAVRQGS 691 Query: 148 GVVVNFGISETPKAALVTFTDSKGKPLAVGAQGHLESGKQTFVIGYDGQGYISGLTDQNV 207 G++++F I AA ++ D +G+PL +G+Q Q +G+DGQ Y GL N Sbjct: 692 GLLLDFPIRAV-VAASISLVDERGEPLPLGSQAEETGSGQRASVGWDGQVYFEGLQSDNQ 750 Query: 208 ATIDLPDGSSCRAAF 222 + PDG +C+A F Sbjct: 751 LRVVRPDGRACQARF 765 >YPO1696 [NU] COG3188 P pilus assembly protein, porin PapC Ype Yersinia pestis Length = 815 Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 4/208 (1%) Query: 35 YRASFGRVEVGVQQYGSNTRATAQIDGSIAFAGGGVFFGNRIDDAFAVVNA-GAPNVAVQ 93 +R S +G+ +N + GS+ V+ N I+DAFA+V+ G N+ V Sbjct: 610 WRTSMMESRMGLYGNSNNYNYWGGLTGSLVVMNRSVYASNMINDAFALVSTNGFSNIPVS 669 Query: 94 YENRPVGVTDSRGLLLVPYLNSYQKNKISIDPKNLPVDADVPSTREVVVPADRSGVVVNF 153 YEN+ +G T+++G LL+P + SY + K IDP NLP D +P+ + +RSG ++NF Sbjct: 670 YENQLIGTTNAKGYLLIPTVASYYQAKFQIDPMNLPADVMLPNVERRLAIGERSGYLINF 729 Query: 154 GISETPKAALVTFTDSKGKPLAVGAQGHLESGKQTFVIGYDGQGYISGLTD-QNVATIDL 212 I A + TD+ G+ L G+ + +G+DG YI + N+ I Sbjct: 730 PIKRI-SAVNIRITDASGQDLPKGSAIYTTGNIPISYVGWDGMVYIEQVAQLNNLRIIRA 788 Query: 213 PDGSSCRAAFGYAPKPGEQVAIKDVICQ 240 +G+ C + F G Q A +C+ Sbjct: 789 DNGTQCYSQFKLKTTEGIQDA-GTTVCR 815