BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0005.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9611 Non COG                                                       115   3e-26
RSc2582 [NU] COG5268 Type IV secretory pathway, TrbD component R...   112   2e-25

>mll9611 Non COG
          Length = 216

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%)

Query: 9   VPGFFAPVHRALTDPILMGGAPRTVAIANGTLAAAIALGLHLWIPGALIWAVGHAAAVWA 68
           VPG+  PVHRALT+ I++GGAPR +AI NGTLA A+ LGL LW+ G LIWAVGHA AVWA
Sbjct: 134 VPGWTVPVHRALTEQIMLGGAPRGIAILNGTLAGAVGLGLRLWLIGLLIWAVGHATAVWA 193

Query: 69  AKRDPLFVDVVRRHLRYPSYL 89
           A+RDPLF +V RRHLR P +L
Sbjct: 194 ARRDPLFFEVGRRHLRLPGHL 214


>RSc2582 [NU] COG5268 Type IV secretory pathway, TrbD component Rso
          Ralstonia solanacearum
          Length = 90

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query: 6  DPEVPGFFAPVHRALTDPILMGGAPRTVAIANGTLAAAIALGLHLWIPGALIWAVGHAAA 65
          D    GF  P+HR+LT+PILMGGAPRTVAIANGTLAAA+ LGL LWIPG ++W VGH+ A
Sbjct: 5  DSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSMA 64

Query: 66 VWAAKRDPLFVDVVRRHLRYPSYL 89
          VW A+ DP F+ V  RH+++ S L
Sbjct: 65 VWGARVDPQFMQVFARHIKHKSLL 88