BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0020.p         (188 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2249 [T] COG0784 FOG Ccr Caulobacter vibrioides                     148   8e-36
CC3155 [T] COG0784 FOG Ccr Caulobacter vibrioides                     144   1e-34
CC1364 [T] COG0784 FOG Ccr Caulobacter vibrioides                     136   3e-32
CC0440 [T] COG0784 FOG Ccr Caulobacter vibrioides                     104   1e-22
RSp1402 [T] COG0784 FOG Rso Ralstonia solanacearum                     96   3e-20

>CC2249 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 172

 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 6/163 (3%)

Query: 13  FNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITDWSMPI 72
             KLRFL+ DDN H+R I+  +L   G R + EA DGA AL++   +  DI I D+ M  
Sbjct: 5   LEKLRFLLVDDNQHIRSIVSAILKGVGVRHIREAMDGAEALQILRDWQTDIAIVDFKMNP 64

Query: 73  FDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKGLYQRI 132
            DG+   Q++R      +PY PIIMLTG +E+ RV  ARDAGVTE + KP++A+ L  RI
Sbjct: 65  LDGVMFTQLVRNSPDTVDPYLPIIMLTGFAERHRVFEARDAGVTEIVVKPVTARSLLDRI 124

Query: 133 MNVVANPRPFIKTKTYFGPDRRRXRCSKRRARPSRTPPWRKTN 175
             V+ +PRPFI++  YFGP      C +RR  P    P+R++ 
Sbjct: 125 NTVIFHPRPFIRSPDYFGP------CRRRRVDPQHQGPFRRSG 161


>CC3155 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 180

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 92/138 (66%)

Query: 13  FNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITDWSMPI 72
           F+ L+ L+ +DN HMR +L  +L + G R ++EA DGA AL        D+V+TD +M  
Sbjct: 3   FDLLKILLVEDNQHMRILLIEMLRAIGVRHIHEASDGAEALATMRSTYIDVVLTDLTMSG 62

Query: 73  FDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKGLYQRI 132
            DG+E   ++R+     NP+ PI+M+TGHS +RRV  ARDAGV EFLAKPI+A+GL  R+
Sbjct: 63  LDGVEFVHLLRRSPDSPNPFCPIVMITGHSTERRVREARDAGVNEFLAKPITARGLVHRL 122

Query: 133 MNVVANPRPFIKTKTYFG 150
             ++ NPRPFI+   YFG
Sbjct: 123 TLLIENPRPFIRAGDYFG 140


>CC1364 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 181

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 93/145 (64%)

Query: 11  IDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITDWSM 70
           +DF  +  L+ DDN +MR+++ T+L + G R + EA DG   L+++     DI+ TD  M
Sbjct: 1   MDFRDVSVLLVDDNANMRKVVGTMLKAAGVRRIREANDGLEGLKIFQTQEIDIIFTDLMM 60

Query: 71  PIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKGLYQ 130
              DGL   + +R   +  N + PIIM+TGH+ +R +  AR AGVTEFLAKP++A+G+  
Sbjct: 61  QPVDGLAFIRWVRTSTASPNHFVPIIMMTGHATQRTLNEARMAGVTEFLAKPLTARGVMH 120

Query: 131 RIMNVVANPRPFIKTKTYFGPDRRR 155
           RI  +V NPRPF++   YFGP RRR
Sbjct: 121 RINEIVNNPRPFVRASEYFGPCRRR 145


>CC0440 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 200

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%)

Query: 10  RIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITDWS 69
           RI+  +   L+ DDN     IL  ++  FG ++++ AE  A A  +      D++I+D  
Sbjct: 10  RINLERATVLVLDDNGPSLDILSQVVSGFGVKQLHRAESVADAQSLIKTKTFDLIISDVQ 69

Query: 70  MPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKGLY 129
           MP+ DG+E  + +R+     N + P+I++TGH+   ++   RDAG    +AKPI+ K L 
Sbjct: 70  MPVTDGIEFIEWLRREGGDANRFIPVILVTGHTRTSQIVKIRDAGANYVVAKPITPKVLL 129

Query: 130 QRIMNVVANPRPFIKTKTYFGPDRR 154
           +RI  V    R FI+  T+ GPDRR
Sbjct: 130 ERIFWVAREDRAFIECPTFVGPDRR 154


>RSp1402 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 133

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 70/122 (57%)

Query: 11  IDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITDWSM 70
           +D ++ RFL+ DD P MRRI+R LL   G   V EAEDGA  L        D VI+DW+M
Sbjct: 1   MDKSQYRFLVVDDFPTMRRIVRNLLKELGFANVDEAEDGAAGLAKVKEGRFDFVISDWNM 60

Query: 71  PIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKGLYQ 130
           P  DGL++ Q IR   + G    P++M+T  ++K  +  A  AG   ++ KP +A  L +
Sbjct: 61  PNMDGLQMLQGIRADPNPGINKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDE 120

Query: 131 RI 132
           ++
Sbjct: 121 KL 122