BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0112.p (357 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr1201 [E] COG4177 ABC-type branched-chain amino acid transport... 116 9e-26 BH0249 [E] COG4177 ABC-type branched-chain amino acid transport ... 110 6e-24 AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport... 108 1e-23 all1949 [E] COG4177 ABC-type branched-chain amino acid transport... 97 5e-20 RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport... 87 7e-17 >slr1201 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Syn Synechocystis Length = 410 Score = 116 bits (290), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 151/343 (44%), Gaps = 51/343 (14%) Query: 46 FLIWIFMALGLCLMWGYGGMLSFGQTFFFGIAGYGYGV-LAINMGGG------------- 91 FL +ALG+ L+WGY G+LS G FF + GY + + L + + G Sbjct: 69 FLSLAIIALGIDLIWGYTGLLSLGHGIFFALGGYAFAMYLNLQLPEGQLPEFFGLYGVDK 128 Query: 92 ---------TATIAALVLSVVTAMIAAGILGYFMIWGGISGIFFGIVTLSATLVL-AFFL 141 + + L + +V IAA +LGY + I G++F I+T +A LV FF Sbjct: 129 LPLIWQPFHSLPVTVLAMVLVPGAIAA-LLGYLIFRNRIKGVYFSILTQAALLVFYNFFN 187 Query: 142 GQTAGPEWHIGPARLNGFNGMKGMDPLT---VADFDIEGSALYYVMIALIVIVYISLRML 198 GQ +NG NG+K +A D Y V + +++VYI R L Sbjct: 188 GQQK---------LINGTNGLKTDTERIFGYLASSDGVQLVFYEVTVLALLLVYILCRWL 238 Query: 199 VNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAGLSGALYTSWGQFITPSSI 258 + G ++VA R++ R GYD +++L F I +AGLSG LYT ITPS + Sbjct: 239 TSGRFGRILVAIRDDETRVRFTGYDPTGFKVLVFGISGAIAGLSGGLYTVQTGIITPSIM 298 Query: 259 GLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQQAALVLMGVLLLATVMLA 318 + + ++WVA GR L ++G+ L+ +++ + L G L L V + Sbjct: 299 DVAFSIEMVIWVAVGGRATLVGAVLGTLLVRLAQSSLSEQFPEVWLFFQGALFLIVVTVL 358 Query: 319 PQGFVLGIGKLVVDWWTR------RRRRDEAPALADTARLQSD 355 P G +V WW R P LA L+ D Sbjct: 359 PNG--------IVGWWQEQGIVQLRNLFRGKPQLATFPSLEED 393 >BH0249 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bha Bacillus halodurans Length = 367 Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 43/333 (12%) Query: 52 MALGLCLMWGYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTATIA--------------- 96 + LGL L+WGY G+LS G FFG+ Y + +++ G T + Sbjct: 48 LVLGLDLLWGYTGVLSLGHGIFFGLGAY-IMAMYLSLEGMTGAVPDFMLWNGITGLPLLW 106 Query: 97 --------ALVLSVVTAMIAAGILGYFMIWGGISGIFFGIVTLSATLVLAFFLGQTAGPE 148 A++ +V M+ A +L +F I ++F I+T + LV+ + Sbjct: 107 QVFSNPFIAIIGAVTIPMLIASLLAFFTFRNRIKDVYFTILTQALVLVMVTLIVSQQSIT 166 Query: 149 WHIGPARLNGFNGMKGMDPLTVADFDIEGSA----LYYVMIALIVIVYISLRMLVNSSVG 204 G NG+ G T+ + + ++ LYY+ + +++V++ LVNS G Sbjct: 167 --------GGTNGLTGFS--TIFGYSLSSASTQQVLYYLTLGCLILVFLLCAALVNSRFG 216 Query: 205 NVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAGLSGALYTSWGQFITPSSIGLPAAA 264 +VA R+ R GYD +++ F + +G+AGL+G LY ITPS IG+ + Sbjct: 217 RALVAIRDGENRLRFSGYDTSMFKVAIFTLSAGIAGLAGMLYVLQVGMITPSMIGIIPSI 276 Query: 265 MPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQQAALVLMGVLLLATVMLAPQGFVL 324 I+WVA GR L ++G+ + + +A L L+G + + V+ P G + Sbjct: 277 EMILWVAIGGRGTLIGPVIGALVTNSAKTFFSESHPEAWLYLLGTVFVVIVLFLPGGIMS 336 Query: 325 GIGKLVVDWWTRRRRRDEAPALADTARLQSDET 357 + K W +R R+E+ + T R ++ + Sbjct: 337 LLRK-----WRKRGERNESDGVKRTEREETHRS 364 >AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 379 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 178/382 (46%), Gaps = 65/382 (17%) Query: 21 FLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMWGYGGMLSFGQTFFFGI---- 76 F+A++ A P+F D + + + +L++ + + + L WGY G+L+ GQ FFG+ Sbjct: 15 FIAIIFAA---PVFGDEFWLNRISKYLVYGMLGVAIALTWGYAGILNLGQGLFFGLGAYM 71 Query: 77 ------------------------------AGYGYGVLAINMGGG-----TATIAALVLS 101 G + IN G + LVL Sbjct: 72 LAMSLKLSSLTSLQQGSDKPVPDFMLWNAEPGAPTELCCINKGSFLWLPFQSQSVGLVLG 131 Query: 102 VVTAMIAAGILGYFMIWGGISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNG 161 V+ ++ AG LG + ISG+F I+TL+ L++ + A P NGFNG Sbjct: 132 VLLPVLIAGALGMLVFRKRISGVFVSIITLALVLLVRLVVVD-AQPV-------TNGFNG 183 Query: 162 MKGMDPLTVA--DFDIEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEM 219 + + L V +FD A YY+ A + + I R++V + G ++ A R++ RA Sbjct: 184 LTDLGWLMVGGIEFDPYSRATYYLCAACLSLTLIGARLVVETRAGMILQAIRDDQVRARY 243 Query: 220 LGYDVRKYQLLTFVIGSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLT 279 LG+DV YQ+ FVI +G+AG++G LY +F +P+ + L + +VW A GR+ L Sbjct: 244 LGFDVSLYQVFFFVISAGIAGVAGMLYVVVAEFASPTFMDLSFSVTMVVWAAVGGRSSLL 303 Query: 280 ATLVGSFLLLFGFQTITVYSQQAALV-----LMGVLLLATVMLAPQGFVLGIGKLVVDWW 334 +G+ L+ + S+ ALV ++G++ + V+ P+G G+ V+ + Sbjct: 304 GACIGAILINMIEAEV---SETEALVEAWKAIIGLIFVLVVLFMPRGLG-GVAHDVLRTF 359 Query: 335 TRRRRRDEAPALADTARLQSDE 356 TRR + PA+A +A Q E Sbjct: 360 TRRVK----PAVAPSALQQQSE 377 >all1949 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 372 Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 155/354 (43%), Gaps = 36/354 (10%) Query: 29 LIYPLFADSYDVGNFAYFLIWIFMALGLCLMWGYGGMLSFGQTFFFGIAGYG---YGVLA 85 LI PL + + FL +ALG+ L+WGY G+LS G FFG+ GY Y L Sbjct: 24 LIMPLVLSEFRLNLLGRFLSLAIVALGIDLIWGYTGLLSLGHGIFFGLGGYAIAMYLKLQ 83 Query: 86 INMGG--------GTATIA-----------ALVLSVVTAMIAAGILGYFMIWGGISGIFF 126 I G G + A+ V+ + AG+LGY + I G++F Sbjct: 84 IPEGELPDFMELYGVTELPWFWRPFYSFPIAVAAVVIIPGLLAGLLGYLVFRNRIKGVYF 143 Query: 127 GIVTLSATLV-LAFFLGQTAGPEWHIGPARLNGFNGMKGMDPL---TVADFDIEGSALYY 182 I+T +A +V FF GQ NG NG+ L TV+D + Y Sbjct: 144 SILTQAAIIVFFNFFNGQQ---------QFFNGTNGLIDFTTLFGATVSDPKTK-FIFYT 193 Query: 183 VMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAGLS 242 + + + Y R L + G +++A R++ R GYD ++ L F + +AG++ Sbjct: 194 LTVLFLAATYGICRWLTSGRFGRLLIAIRDDESRVRFSGYDPTDFKTLVFAVSGAIAGIA 253 Query: 243 GALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQQA 302 GA YT ++P ++ + + ++WVA GR L ++G+ L+ + ++ + Sbjct: 254 GAFYTLQSGSVSPRAMDIAFSIEMVIWVAVGGRATLIGAVLGTLLVNYARAFLSEQFAEI 313 Query: 303 ALVLMGVLLLATVMLAPQGFVLGIGKLVVDWWTRRRRRDEAPALADTARLQSDE 356 L G L L V + P G V + + + R ++ P+L + +Q + Sbjct: 314 WLFFQGALFLIVVTVLPDGLVGWLRSQNIPFLKRPQQISTYPSLEEDPEVQHER 367 >RSc2039 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 396 Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 94/336 (27%), Positives = 145/336 (43%), Gaps = 41/336 (12%) Query: 20 CFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMWGYGGMLSFGQTFFFGIAGY 79 C LAV AG +PL +Y + + + AL L L+WGY G+LS G FF + GY Sbjct: 39 CALAVPAG---HPLHLSAYALTLVGKIMCYALAALALDLVWGYCGILSLGHGLFFALGGY 95 Query: 80 GYGVL---AINMGG-----------------------GTATIA-ALVLSVVTAMIAAGIL 112 G+ AI G GT A A +L V+ + A + Sbjct: 96 AMGMYLMRAIGRDGVYQSDLPDFMVFLDWKELPWFWHGTGHFAWAALLVVLVPGVLAWLF 155 Query: 113 GYFMIWGGISGIFFGIVTLSATL--VLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTV 170 G+F + G++ I+T + T +L FF +T G NGF K + + Sbjct: 156 GFFAFRSRVKGVYLSIITQAMTYAAMLLFFRNET-------GFGGNNGFTDFKRILGYPI 208 Query: 171 ADFDIEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLL 230 A + L+ +V+ +I+ R +V S G V+ A R+ R GY Y+L Sbjct: 209 AAVSTR-TVLFVATFIALVLAFIACRAIVTSKFGRVVTAIRDAEARVMFSGYSPLGYKLF 267 Query: 231 TFVIGSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLF 290 + + L G++GALY I PS + + VWVA GR L +VG+FL+ Sbjct: 268 VWTFSAVLCGIAGALYVPQVGIINPSEMSPGNSIEMAVWVAVGGRGTLVGPIVGAFLVNG 327 Query: 291 GFQTITVYSQQAALVLMGVLLLATVMLAPQGFVLGI 326 +T + + L ++G + + + P G VLG+ Sbjct: 328 AKTVLTAWVPEYWLFVLGAVFVLVTLFLPNG-VLGL 362