BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0096.p (379 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport... 305 1e-82 BH0249 [E] COG4177 ABC-type branched-chain amino acid transport ... 234 3e-61 all1949 [E] COG4177 ABC-type branched-chain amino acid transport... 212 1e-54 DRA0322 [E] COG4177 ABC-type branched-chain amino acid transport... 204 4e-52 slr1201 [E] COG4177 ABC-type branched-chain amino acid transport... 204 4e-52 >AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 379 Score = 305 bits (781), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 170/360 (47%), Positives = 250/360 (69%), Gaps = 13/360 (3%) Query: 17 QLAPLLIVCAMVFVLPVLLNNDFLLNKVARYLVLGILTISLGLSWGFGGILNLGQAMSFG 76 Q+A ++ A++F PV ++F LN++++YLV G+L +++ L+WG+ GILNLGQ + FG Sbjct: 8 QIAAYVLFIAIIFAAPVF-GDEFWLNRISKYLVYGMLGVAIALTWGYAGILNLGQGLFFG 66 Query: 77 LGSYAMAMALKLKTVPVHTGASG--LPDFMVWNNVQHLP----------WFWEPFRSLTF 124 LG+Y +AM+LKL ++ S +PDFM+WN P + W PF+S + Sbjct: 67 LGAYMLAMSLKLSSLTSLQQGSDKPVPDFMLWNAEPGAPTELCCINKGSFLWLPFQSQSV 126 Query: 125 AIAAGLIVPALVAAALGWFMFRGRVTGVYVSIITLATMVVINLVIIDQQSYTGGFNGITD 184 + G+++P L+A ALG +FR R++GV+VSIITLA ++++ LV++D Q T GFNG+TD Sbjct: 127 GLVLGVLLPVLIAGALGMLVFRKRISGVFVSIITLALVLLVRLVVVDAQPVTNGFNGLTD 186 Query: 185 LAQLEIFGVAFDAYGRATYYLVASCVLLSLLVAFAFTRTKAGLIVQAIRDHESRVRYFGY 244 L L + G+ FD Y RATYYL A+C+ L+L+ A T+AG+I+QAIRD + R RY G+ Sbjct: 187 LGWLMVGGIEFDPYSRATYYLCAACLSLTLIGARLVVETRAGMILQAIRDDQVRARYLGF 246 Query: 245 DVALYQIFVFALSAAIAGLAGMLYTVVMEFASPTFLGVQLSLSVVVWCAVGGRQSLVGAF 304 DV+LYQ+F F +SA IAG+AGMLY VV EFASPTF+ + S+++VVW AVGGR SL+GA Sbjct: 247 DVSLYQVFFFVISAGIAGVAGMLYVVVAEFASPTFMDLSFSVTMVVWAAVGGRSSLLGAC 306 Query: 305 LGAVLVAGMQGALSESAAFLETWTLVMGALFVLVVLFLPKGLAGLAQAALRWIVLRRQTA 364 +GA+L+ ++ +SE+ A +E W ++G +FVLVVLF+P+GL G+A LR R + A Sbjct: 307 IGAILINMIEAEVSETEALVEAWKAIIGLIFVLVVLFMPRGLGGVAHDVLRTFTRRVKPA 366 >BH0249 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bha Bacillus halodurans Length = 367 Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 208/340 (61%), Gaps = 14/340 (4%) Query: 37 NDFLLNKVARYLVLGILTISLGLSWGFGGILNLGQAMSFGLGSYAMAMALKLKTVPVHTG 96 +DF N + RY+ IL + L L WG+ G+L+LG + FGLG+Y MAM L L+ + TG Sbjct: 32 SDFRTNLLGRYIAFAILVLGLDLLWGYTGVLSLGHGIFFGLGAYIMAMYLSLEGM---TG 88 Query: 97 ASGLPDFMVWNNVQHLPWFWEPFRSLTFAIAAGLIVPALVAAALGWFMFRGRVTGVYVSI 156 A +PDFM+WN + LP W+ F + AI + +P L+A+ L +F FR R+ VY +I Sbjct: 89 A--VPDFMLWNGITGLPLLWQVFSNPFIAIIGAVTIPMLIASLLAFFTFRNRIKDVYFTI 146 Query: 157 ITLATMVVINLVIIDQQSYTGGFNGITDLAQLEIFGVAFDAYGRATYYLVASCVLLSLLV 216 +T A ++V+ +I+ QQS TGG NG+T + + + ++ + + YYL C++L L+ Sbjct: 147 LTQALVLVMVTLIVSQQSITGGTNGLTGFSTIFGYSLSSASTQQVLYYLTLGCLILVFLL 206 Query: 217 AFAFTRTKAGLIVQAIRDHESRVRYFGYDVALYQIFVFALSAAIAGLAGMLYTVVMEFAS 276 A ++ G + AIRD E+R+R+ GYD +++++ +F LSA IAGLAGMLY + + + Sbjct: 207 CAALVNSRFGRALVAIRDGENRLRFSGYDTSMFKVAIFTLSAGIAGLAGMLYVLQVGMIT 266 Query: 277 PTFLGVQLSLSVVVWCAVGGRQSLVGAFLGAVLVAGMQGALSESAAFLETWTLVMGALFV 336 P+ +G+ S+ +++W A+GGR +L+G +GA++ + SES E W ++G +FV Sbjct: 267 PSMIGIIPSIEMILWVAIGGRGTLIGPVIGALVTNSAKTFFSESHP--EAWLYLLGTVFV 324 Query: 337 LVVLFLPKGLAGLAQAALRWIVLRRQTASGGVAQGVGQTE 376 ++VLFLP G+ L + +W R+ + GV +TE Sbjct: 325 VIVLFLPGGIMSLLR---KW----RKRGERNESDGVKRTE 357 >all1949 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 372 Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 192/330 (58%), Gaps = 16/330 (4%) Query: 23 IVCAMVFVLPVLLNNDFLLNKVARYLVLGILTISLGLSWGFGGILNLGQAMSFGLGSYAM 82 I ++ ++P++L+ +F LN + R+L L I+ + + L WG+ G+L+LG + FGLG YA+ Sbjct: 18 IALILILIMPLVLS-EFRLNLLGRFLSLAIVALGIDLIWGYTGLLSLGHGIFFGLGGYAI 76 Query: 83 AMALKLKTVPVHTGASGLPDFMVWNNVQHLPWFWEPFRSLTFAIAAGLIVPALVAAALGW 142 AM LKL+ +P LPDFM V LPWFW PF S A+AA +I+P L+A LG+ Sbjct: 77 AMYLKLQ-IP----EGELPDFMELYGVTELPWFWRPFYSFPIAVAAVVIIPGLLAGLLGY 131 Query: 143 FMFRGRVTGVYVSIITLATMVVINLVIIDQQSYTGGFNGITDLAQLEIFGVAFDAYGRAT 202 +FR R+ GVY SI+T A ++V QQ + G NG+ D L FG T Sbjct: 132 LVFRNRIKGVYFSILTQAAIIVFFNFFNGQQQFFNGTNGLIDFTTL--FGATVS--DPKT 187 Query: 203 YYLVASCVLLSLLVAFAFTR----TKAGLIVQAIRDHESRVRYFGYDVALYQIFVFALSA 258 ++ + +L L + R + G ++ AIRD ESRVR+ GYD ++ VFA+S Sbjct: 188 KFIFYTLTVLFLAATYGICRWLTSGRFGRLLIAIRDDESRVRFSGYDPTDFKTLVFAVSG 247 Query: 259 AIAGLAGMLYTVVMEFASPTFLGVQLSLSVVVWCAVGGRQSLVGAFLGAVLVAGMQGALS 318 AIAG+AG YT+ SP + + S+ +V+W AVGGR +L+GA LG +LV + LS Sbjct: 248 AIAGIAGAFYTLQSGSVSPRAMDIAFSIEMVIWVAVGGRATLIGAVLGTLLVNYARAFLS 307 Query: 319 ESAAFLETWTLVMGALFVLVVLFLPKGLAG 348 E F E W GALF++VV LP GL G Sbjct: 308 EQ--FAEIWLFFQGALFLIVVTVLPDGLVG 335 >DRA0322 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Dra Deinococcus radiodurans Length = 358 Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 6/289 (2%) Query: 61 WGFGGILNLGQAMSFGLGSYAMAMALKLKTVPVHTGASGLPDFMVWNNVQHLPWFWEPFR 120 WG GIL+LGQ + FGLG YA+AM LKL P LPDFM++N V+ LPWFW+PF Sbjct: 54 WGRAGILSLGQGLFFGLGGYALAMHLKLAATP----KGELPDFMLYNGVEKLPWFWQPFH 109 Query: 121 SLTFAIAAGLIVPALVAAALGWFMFRGRVTGVYVSIITLATMVVINLVIIDQQSYTGGFN 180 S FA+ + +P L A +GW MFR R+TGV+VSIIT A ++ + Q T G N Sbjct: 110 SAPFALLMVVALPGLAAFLIGWLMFRRRITGVFVSIITQALVLAFVTWLSGAQGLTSGTN 169 Query: 181 GITDLAQLEIFGVAFDAYGRATYYLVASCVLLSLLVAFAFTRTKAGLIVQAIRDHESRVR 240 GITD + DA+ R Y+ + LSL RT G ++ A+RD+E+R R Sbjct: 170 GITDFQTFLGLNMRSDAFARGLYWATVLLLALSLAGTAWLLRTPFGSLLTAVRDNENRTR 229 Query: 241 YFGYDVALYQIFVFALSAAIAGLAGMLYTVVMEFASPTFLGVQLSLSVVVWCAVGGRQSL 300 + GY+ A +++ F L ++GL+G LYT+ + SP +GV S+ +VVW A+GGR SL Sbjct: 230 FLGYNPAAFKVAAFVLGGVLSGLSGALYTLHLGTISPAMIGVAFSIELVVWVALGGRASL 289 Query: 301 VGAFLGAVLVAGMQGALSESAAFLETWTLVMGALFVLVVLFLPKGLAGL 349 GA G VL + +S +A + W VMG LFV VV+FLP+G+AGL Sbjct: 290 WGAAGGLVLGELAKDRISSAAP--DAWLYVMGGLFVGVVMFLPQGVAGL 336 >slr1201 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Syn Synechocystis Length = 410 Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/322 (40%), Positives = 184/322 (57%), Gaps = 10/322 (3%) Query: 34 LLNN-DFL-LNKVARYLVLGILTISLGLSWGFGGILNLGQAMSFGLGSYAMAMALKLKTV 91 LLNN FL L + R+L L I+ + + L WG+ G+L+LG + F LG YA AM L L+ + Sbjct: 54 LLNNFPFLRLRLMGRFLSLAIIALGIDLIWGYTGLLSLGHGIFFALGGYAFAMYLNLQ-L 112 Query: 92 PVHTGASGLPDFMVWNNVQHLPWFWEPFRSLTFAIAAGLIVPALVAAALGWFMFRGRVTG 151 P LP+F V LP W+PF SL + A ++VP +AA LG+ +FR R+ G Sbjct: 113 P----EGQLPEFFGLYGVDKLPLIWQPFHSLPVTVLAMVLVPGAIAALLGYLIFRNRIKG 168 Query: 152 VYVSIITLATMVVINLVIIDQQSYTGGFNGI-TDLAQLEIFGVAFDAYGRATYYLVASCV 210 VY SI+T A ++V QQ G NG+ TD ++ + + D Y + + Sbjct: 169 VYFSILTQAALLVFYNFFNGQQKLINGTNGLKTDTERIFGYLASSDGVQLVFYEVTVLAL 228 Query: 211 LLSLLVAFAFTRTKAGLIVQAIRDHESRVRYFGYDVALYQIFVFALSAAIAGLAGMLYTV 270 LL ++ T + G I+ AIRD E+RVR+ GYD +++ VF +S AIAGL+G LYTV Sbjct: 229 LLVYILCRWLTSGRFGRILVAIRDDETRVRFTGYDPTGFKVLVFGISGAIAGLSGGLYTV 288 Query: 271 VMEFASPTFLGVQLSLSVVVWCAVGGRQSLVGAFLGAVLVAGMQGALSESAAFLETWTLV 330 +P+ + V S+ +V+W AVGGR +LVGA LG +LV Q +LSE F E W Sbjct: 289 QTGIITPSIMDVAFSIEMVIWVAVGGRATLVGAVLGTLLVRLAQSSLSEQ--FPEVWLFF 346 Query: 331 MGALFVLVVLFLPKGLAGLAQA 352 GALF++VV LP G+ G Q Sbjct: 347 QGALFLIVVTVLPNGIVGWWQE 368