BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0094.p (416 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA792 [E] COG0683 ABC-type branched-chain amino acid transport... 373 e-103 all1951 [E] COG0683 ABC-type branched-chain amino acid transport... 336 5e-92 slr0447 [E] COG0683 ABC-type branched-chain amino acid transport... 318 1e-86 BH0251 [E] COG0683 ABC-type branched-chain amino acid transport ... 314 3e-85 DRA0320 [E] COG0683 ABC-type branched-chain amino acid transport... 302 1e-81 >AGpA792 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 447 Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/383 (48%), Positives = 266/383 (69%), Gaps = 10/383 (2%) Query: 37 AGGEIKVGVLFSLTGTTAIIEESLNKATLLAIEEINATGGIKGSKIVPIVEDPASDPATF 96 A IKVG L+S TG ++ E+ L ++A+ EINA GG+ G ++ +VED ASDP TF Sbjct: 61 AADAIKVGALYSQTGGLSVAEKLLANGVMMAVAEINAAGGVLGRQVEVVVEDGASDPKTF 120 Query: 97 SEKARKLVVGDKCVSVFGSYTSASRKAVLPVFERQNNLYWYPTLYEGRECSKNVIYTGAV 156 SEKA KL++ DK +VFG +TSASRKAVLP+FER+ + +Y T YEG ECS+NV+Y+GAV Sbjct: 121 SEKASKLILKDKISTVFGCHTSASRKAVLPIFERRGAMLFYQTHYEGFECSRNVVYSGAV 180 Query: 157 PNQQQDEFVPWLVKKFG-KKFYLIGSNYIYPKEENNYCKKLLEKLGGEVVAEEYVPLGHS 215 PNQQ ++PW+V+K G KKF+++GSNY+YP+E KKL+E G E VA+EY+ LGHS Sbjct: 181 PNQQLSNYIPWIVEKLGKKKFFIVGSNYVYPREMAKVSKKLIEAAGAEWVADEYLELGHS 240 Query: 216 EFSSVINKIRSTQPNVIFSTVVGDSVVALHRQYKAAGLDPEKMPMASLTTSENEVAAMGG 275 E++ +++KI+ + +V+ S VVGDS++A +R++K GL E +P+ + TSE E+AAMG Sbjct: 241 EWAVMVSKIKESGADVVLSNVVGDSIIAFYREFKNQGLSQEDIPICATVTSEIEIAAMGA 300 Query: 276 EAAAGHFTSAPYFMVHKSPENEKFVEAYKKRWGADK-VTHFVSEACYFQTYLFKQAVEKL 334 E AAG +TS PYFM ++PEN+ F+E ++ K VT+ EA YFQ +L+KQAVEK Sbjct: 301 EYAAGSYTSFPYFMSIETPENKSFIERFRTFVNDPKAVTYHSLEAAYFQVFLWKQAVEK- 359 Query: 335 ATSDLTPPNIRDAVKGQEVIAPQGKVRIEPENLHTWLWPKIAQAKSNGQFEILVEAKEWL 394 + DL+ IR ++GQ AP GKV +P+NLH WL P+I Q + +GQ +++ + Sbjct: 360 -SGDLSADAIRAGIRGQTYDAPGGKVTTDPDNLHCWLTPRIGQWQPDGQSKVVNAYPAPI 418 Query: 395 KPVPYAAYPGQS-----CTEKGL 412 KP+PY+AY G++ CT GL Sbjct: 419 KPLPYSAY-GETESNLFCTTNGL 440 >all1951 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 438 Score = 336 bits (862), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 175/372 (47%), Positives = 247/372 (66%), Gaps = 5/372 (1%) Query: 33 LAYAAGGEIKVGVLFSLTGTTAIIEESLNKATLLAIEEINATGGIKGSKIVPIVEDPASD 92 +A + G IK+G+L SL+GT +I E+S+ A LAI+EINA GG+ G +I IVED AS+ Sbjct: 47 VAASGGNTIKIGILHSLSGTMSISEKSVVDAEKLAIKEINAAGGVLGKQIEAIVEDGASN 106 Query: 93 PATFSEKARKLVVGDKCVSVFGSYTSASRKAVLPVFERQNNLYWYPTLYEGRECSKNVIY 152 TF EKA KL+ DK VFG +TSASRK V PVFE ++++ WYP YEG+ECSKN+ Y Sbjct: 107 WDTFREKATKLIDQDKVAVVFGCWTSASRKNVKPVFESKDHMLWYPVQYEGQECSKNIFY 166 Query: 153 TGAVPNQQQDEFVPWLVKKFGKKFYLIGSNYIYPKEENNYCKKLLEKLGGEVVAEEYVPL 212 TGA PNQQ + V WL+K GK+F+L+GS+Y++P+ N K LE LGG+ V E+Y+PL Sbjct: 167 TGAAPNQQIEPSVDWLLKNKGKEFFLVGSDYVFPRTANTIIKAQLEALGGKTVGEDYLPL 226 Query: 213 GHSEFSSVINKIRSTQPN--VIFSTVVGDSVVALHRQYKAAGLDPEKMPMASLTTSENEV 270 G++E + +I+KI+ PN VI++T+ GDS VA +Q K AGL P+K P S++ +E EV Sbjct: 227 GNTEVTPIISKIKQALPNGGVIYNTLNGDSNVAFFKQLKGAGLTPDKHPSMSVSIAEEEV 286 Query: 271 AAMGGEAAAGHFTSAPYFMVHKSPENEKFVEAYKKRWGADKVTHFVSEACYFQTYLFKQA 330 A+G E GH+ + YF +P N+KFVEA+KK +GAD+VT+ EA Y YL+KQ+ Sbjct: 287 KAIGVEYLKGHYAAWNYFQTVDTPANKKFVEAFKKEYGADRVTNDPMEAAYIAVYLWKQS 346 Query: 331 VEKLATSDLTPPNIRDAVKGQEVIAPQGKVRIEPENLHTWLWPKIAQAKSNGQFEILVEA 390 VEK + DL +R A GQ + AP+GKV + N H +I + + +G F+I+ Sbjct: 347 VEKAGSPDLA--KVRAAAYGQTIDAPEGKVTVN-TNHHISKIVRIGEVRDDGLFDIIYAT 403 Query: 391 KEWLKPVPYAAY 402 ++PVP+ + Sbjct: 404 PAPVEPVPWNQF 415 >slr0447 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Syn Synechocystis Length = 446 Score = 318 bits (815), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/370 (46%), Positives = 236/370 (63%), Gaps = 6/370 (1%) Query: 38 GGEIKVGVLFSLTGTTAIIEESLNKATLLAIEEINATGGIKGSKIVPIVEDPASDPATFS 97 G IKVG+L SL+GT AI E ++ +A LAIEEINA GG+ G I I ED ASD TF+ Sbjct: 53 GEPIKVGLLHSLSGTMAISETTVVEAAELAIEEINAAGGVLGRPIEAIKEDGASDWPTFA 112 Query: 98 EKARKLVVGDKCVSVFGSYTSASRKAVLPVFERQNNLYWYPTLYEGRECSKNVIYTGAVP 157 EKA KL+ DK VFG +TSASRKAVLPVFE +N++ WYP YEG+ECSKN+ YTGA P Sbjct: 113 EKAAKLIDQDKVPVVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSKNIFYTGAAP 172 Query: 158 NQQQDEFVPWLVKKFGKKFYLIGSNYIYPKEENNYCKKLLEKLGGEVVAEEYVPLGHSEF 217 NQQ + V WL++ G KF+L+GS+Y++P+ N K+ L+ GGE + E+Y+PLG++E Sbjct: 173 NQQIEPAVDWLLENKGNKFFLVGSDYVFPRTANTIIKEQLKAKGGETLGEDYLPLGNTEV 232 Query: 218 SSVINKIRSTQPN--VIFSTVVGDSVVALHRQYKAAGLDPEKMPMASLTTSENEVAAMGG 275 + +I KIR P+ VIF+T+ GDS VA +Q +AAGL P+K P+ S++ +E EV +G Sbjct: 233 TPIITKIREALPDGGVIFNTLNGDSNVAFFKQIQAAGLTPDKYPVMSVSVAEEEVRQIGK 292 Query: 276 EAAAGHFTSAPYFMVHKSPENEKFVEAYKKRWGADKVTHFVSEACYFQTYLFKQAVEKLA 335 E G F S YF +P N+KFV A+K ++G D+VT+ EA Y YL+K AVE Sbjct: 293 EYLLGQFASWNYFQSVDTPANQKFVAAFKAKYGEDRVTNDPMEAAYISVYLWKAAVEAAG 352 Query: 336 TSDLTPPN---IRDAVKGQEVIAPQGKVRIEPENLHTWLWPKIAQAKSNGQFEILVEAKE 392 TP +R A G+ AP+G V ++P N H +I + GQF I+ + Sbjct: 353 DVGETPEGLEKVRAAAIGKTFDAPEGMVTMQP-NHHISKTVRIGEVNDEGQFTIVWSSDG 411 Query: 393 WLKPVPYAAY 402 + P+P+ + Sbjct: 412 PVDPIPWNQF 421 >BH0251 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bha Bacillus halodurans Length = 419 Score = 314 bits (804), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 155/360 (43%), Positives = 232/360 (64%), Gaps = 2/360 (0%) Query: 40 EIKVGVLFSLTGTTAIIEESLNKATLLAIEEINATGGIKGSKIVPIVEDPASDPATFSEK 99 +I VG+L SL+GT A+ E S+ A LLAIEEIN GG+ G ++VPI+ED AS+P F+E+ Sbjct: 45 QIAVGILHSLSGTMAMSETSVRDAELLAIEEINEAGGVLGKELVPIIEDGASEPNIFAER 104 Query: 100 ARKLVVGDKCVSVFGSYTSASRKAVLPVFERQNNLYWYPTLYEGRECSKNVIYTGAVPNQ 159 A KL+ D+ +FG +TSASRKA+LPV E N L +YP YEG E S N+ Y GA PNQ Sbjct: 105 ATKLLQQDEVAVIFGGWTSASRKAMLPVVEENNGLLFYPVQYEGMEASPNIFYAGAAPNQ 164 Query: 160 QQDEFVPWLVKKFGKKFYLIGSNYIYPKEENNYCKKLLEKLGGEVVAEEYVPLGHSEFSS 219 Q V WL++ G +F+L+GS+Y++P+ N K LE G +V E+Y PLGH+++++ Sbjct: 165 QIVPAVEWLLENRGTEFFLLGSDYVFPRLANAIIKAQLESHGATLVDEQYTPLGHTDYNT 224 Query: 220 VINKIRSTQPNVIFSTVVGDSVVALHRQYKAAGLDPEKMPMASLTTSENEVAAMGGEAAA 279 +I++IR ++P VIF+T+ GDS VA +Q AG+ + + + S++ +E E+ +G + A Sbjct: 225 IISRIRESEPTVIFNTLNGDSNVAFFKQLADAGITADDVTVMSVSVAEEEIRGIGADVLA 284 Query: 280 GHFTSAPYFMVHKSPENEKFVEAYKKRWGADKVTHFVSEACYFQTYLFKQAVEKLATSDL 339 GH S YF +PEN+ FV AY K +G D+VT EA Y +L+ QAVE T+D+ Sbjct: 285 GHLASWNYFQTTDTPENDTFVTAYIKSFGDDRVTGDPIEAGYLMVHLWAQAVEAAGTTDI 344 Query: 340 TPPNIRDAVKGQEVIAPQGKVRIEPENLHTWLWPKIAQAKSNGQFEILVEAKEWLKPVPY 399 +R+A E AP G V+++ +N H + +I + +++GQFE + + E +KP P+ Sbjct: 345 EA--VREAASTIEFSAPGGLVKVDGDNQHLYKTVRIGEVQADGQFEEVWNSGEPVKPDPF 402 >DRA0320 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 390 Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/375 (43%), Positives = 235/375 (62%), Gaps = 7/375 (1%) Query: 36 AAGGEIKVGVLFSLTGTTAIIEESLNKATLLAIEEINATGGIKGSKIVPIVEDPASDPAT 95 +A G +KVGVL SLTGT AI E ++ AT LA++EINA GG+ G K+V + ED ASD T Sbjct: 19 SAQGTVKVGVLHSLTGTMAISELTVANATQLAVDEINAAGGVLGKKLVIVKEDGASDWPT 78 Query: 96 FSEKARKLVVGDKCVSVFGSYTSASRKAVLPVFERQNNLYWYPTLYEGRECSKNVIYTGA 155 F+ KA KL+ D+ +VFG +TSASRKA+LPVFE+ L +YP +EG ECS N+IYTGA Sbjct: 79 FATKAEKLLTQDRVAAVFGGWTSASRKAMLPVFEKNKGLLFYPVQFEGNECSPNIIYTGA 138 Query: 156 VPNQQQDEFVPWLVKKFGKKFYLIGSNYIYPKEENNYCKKLLEKLGGEVVAEEYVPLGHS 215 PNQQ + W + K K +L+GS+Y+YP+ N KK + G ++ EEYV LG + Sbjct: 139 QPNQQALPALEWALSKGYKNIFLLGSDYVYPRTANLILKKHIAASGAKLAGEEYVALGGT 198 Query: 216 EFSSVINKIRSTQPNVIFSTVVGDSVVALHRQYKAAGLDPEKMPMASLTTSENEVAAMGG 275 EFSSVINKI++ +P VI +T+ GDS V+ +QY+AAG +P+ S + +E E A+G Sbjct: 199 EFSSVINKIKAAKPQVIINTLNGDSNVSFFKQYQAAGYSAATLPVISFSIAEQEAQAIGP 258 Query: 276 EAAAGHFTSAPYFMVHKSPENEKFVEAYKKRWGADKVTHFVSEACYFQTYLFKQAVEKLA 335 + G + + YF N+KFV AYKK++GA V Y YL+K AVEK Sbjct: 259 QLLQGQYATWNYFQSLPGAANKKFVAAYKKKYGAGAVVTDPMAHAYLDVYLWKAAVEKAK 318 Query: 336 TSDLTPPNIRDAVKGQEVIAPQGKVRIEPE-NLHTWLWPKIAQAKSNGQFEILVEAKEWL 394 + D P +R A+ G + +P GKV ++ +L ++ Q+ + GQF+ + +++ + Sbjct: 319 SFD--PVAVRKAIVGVSLNSPLGKVTVDKSGSLTQGVY--TGQSGAGGQFKTVAQSRGVV 374 Query: 395 KPVPY--AAYPGQSC 407 +P PY A+PG++C Sbjct: 375 QPQPYDKLAFPGKTC 389