BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0093.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA790 [T] COG3707 Response regulator with putative antitermina...    84   2e-16
PA3363 [T] COG3707 Response regulator with putative antiterminat...    65   1e-10
ML1286 [T] COG3707 Response regulator with putative antiterminat...    59   6e-09

>AGpA790 [T] COG3707 Response regulator with putative antiterminator output
           domain Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 202

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 11/195 (5%)

Query: 20  MVQELADLSAVVVAPVDDQVGMLLRELQRFRMRVRQVWPMPESVPADADVVYC----EYS 75
           ++++L DL  +V+ P   +   L+  L+R    V  +WP+P  +P   DVV+     E  
Sbjct: 5   LLRDLRDLKVLVIHPRTSEGEFLVDHLRRIGCTVSCLWPVPAELPHGTDVVFLAMEDEAR 64

Query: 76  PDLARRLPWIPGDARSALVVI---LPATETVHADALCHATPNAVLPRPFTQNAVLSSLVL 132
           P++ R L  +P  A + L ++    P+T  +    +  +   A++ RP     +L++L +
Sbjct: 65  PEIERLLKCLPNPAPTMLAIVGYENPSTLQI----VLESGALAIVERPIKPFGLLTNLAI 120

Query: 133 ARSQFGYERRLRSKIEKLDDNLRSMRTVERAKAILMATRQMPETEAYGFIRRQAMDRRVS 192
           ARS +   ++L  +  K    +   + + RAKAILMA R   E EAY  +R QAM RRV 
Sbjct: 121 ARSLWLERQKLVKEARKYKRKVLGDQKLARAKAILMANRGTSENEAYREMREQAMARRVP 180

Query: 193 ASAVAAAIVDSFELL 207
              +A +I+ + +LL
Sbjct: 181 IDEIANSIISAEQLL 195


>PA3363 [T] COG3707 Response regulator with putative antiterminator output
           domain Pae Pseudomonas aeruginosa
          Length = 196

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 21/202 (10%)

Query: 18  KTMVQELADLSAVVVAPVDDQVGMLLRELQRFRMRVRQVWPMPESVPADADVVYCE---- 73
            +++  L +L  +V+ P  +    L+ +L R    VRQ WP PES     DVV+      
Sbjct: 4   NSLLGSLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPESFDVPVDVVFTSIFQN 63

Query: 74  -YSPDLARRLPWIPGDARSALVVIL----PATETVHADALCHATPNAVLPRPFTQNAVLS 128
            +  ++A  L    G  R+ LV ++    PA  +   +  CH     V+ +P   + VL 
Sbjct: 64  RHHDEIAALLA--AGTPRTTLVALVEYESPAVLSQIIELECHG----VITQPLDAHRVLP 117

Query: 129 SLVLARSQFGYERRLRSKIEKLDDNLRSMRTVERAKAILMATRQMPETEAYGFIRRQAMD 188
            LV AR       +L+ K E+L + +     + +AKA+LM      E EA+ ++ R+AM 
Sbjct: 118 VLVSARRISEEMAKLKQKTEQLQERIAGQARINQAKALLMQRHGWDEREAHQYLSREAMK 177

Query: 189 RRVSASAVAAAIVDSFELLGYD 210
           RR     +A       ELLG +
Sbjct: 178 RREPILKIAQ------ELLGNE 193


>ML1286 [T] COG3707 Response regulator with putative antiterminator output
           domain Mle Mycobacterium leprae
          Length = 205

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 54/91 (59%)

Query: 115 AVLPRPFTQNAVLSSLVLARSQFGYERRLRSKIEKLDDNLRSMRTVERAKAILMATRQMP 174
           A L +PFT + ++ ++ LA S+F     L  ++  L D L + + VERAK +L   + M 
Sbjct: 110 AYLVKPFTISDLIPAIALAMSRFSELTALEREVATLADRLETRKLVERAKGLLQVKQGMT 169

Query: 175 ETEAYGFIRRQAMDRRVSASAVAAAIVDSFE 205
           E EA+ +I+R AMDRR +   VA  ++++ +
Sbjct: 170 EPEAFKWIQRAAMDRRTTMKRVAEVVLETLD 200