BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0092.p (415 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA789 [E] COG0683 ABC-type branched-chain amino acid transport... 343 3e-94 PA3364 [E] COG0683 ABC-type branched-chain amino acid transport ... 305 2e-82 BH0251 [E] COG0683 ABC-type branched-chain amino acid transport ... 282 1e-75 slr0447 [E] COG0683 ABC-type branched-chain amino acid transport... 275 1e-73 all1951 [E] COG0683 ABC-type branched-chain amino acid transport... 268 2e-71 >AGpA789 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 385 Score = 343 bits (881), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 168/371 (45%), Positives = 235/371 (63%) Query: 35 LTQTTSAPWRIGVLFSRTGFMSVIEETQYQGTQLAIEEVNEAGGVCGRELVPVAYDPGSD 94 + S WR+GVLFS TG +E+TQ T LAIEE+N AGGV GR + PVAYDP S Sbjct: 1 MAMMNSESWRVGVLFSETGVTGAVEKTQRFATLLAIEEINAAGGVLGRAIEPVAYDPQST 60 Query: 95 SAAYGHYAKRLMIEDQVSTIFGCYTSSSRKAVLPVVERLNGLLWYPTLYEGFEASPNVIY 154 Y A +L ED+V +FGC+ SS+RKA LPV+E + LL+YPTLYEGFE S + IY Sbjct: 61 PNLYKELAMKLCDEDRVRVVFGCHMSSTRKAALPVIEARDALLFYPTLYEGFEYSRHCIY 120 Query: 155 TGASPNQNSLALCRYLMDTFGTRFYFVGSDYIYPRESNRVMRELLKSNGGSVVGERYVNV 214 TGA+PNQNS+ L +L +G R + VGS+Y+YP ESNR + +L GG V+ E YV + Sbjct: 121 TGAAPNQNSVQLVDFLTTHYGKRVFLVGSNYVYPYESNRTISDLFLQVGGQVLDEMYVPL 180 Query: 215 YARWQDFVPIIQDIKRVRPDVIFSTVVGEGTVFLYQAYANVGLDPKQVPIASLTTTEAEI 274 + +D II+ I +PDVI+ST+VG+G + Y A+ G D +PIAS +T+EA++ Sbjct: 181 NLKTEDIAKIIRHIGAAQPDVIYSTIVGDGIIPFYTAFKEAGFDAATMPIASQSTSEADV 240 Query: 275 AAMGFDVGEGHVTAASYFQGVEGSANNAFVQRFKKRFGADISTNMCAEASYFQLHLFAKA 334 M +V EGH+TAA +F ++ +AFV ++KR+G + AEA+YFQ++L+A A Sbjct: 241 IRMRPEVAEGHITAAPFFASLDTPRAHAFVSAYQKRYGKQMLPTAPAEAAYFQVYLYAAA 300 Query: 335 LQQVNSLDTEVLRSMVFGTSFDAPQGAVTVNPMSGHTDLWTRIGRANRQGQFDVVSQSKE 394 LQ+ + E L ++ +DAPQGAV ++ ++ HT LW R+ R N G +D+V Sbjct: 301 LQRAGNDGLEQLLPALYEVEYDAPQGAVKIDRLTNHTHLWPRVARVNAHGGYDIVYDPSL 360 Query: 395 PVHADPFLIGY 405 V DPF+ Y Sbjct: 361 RVAPDPFMREY 371 >PA3364 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 385 Score = 305 bits (780), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/359 (44%), Positives = 219/359 (61%) Query: 45 IGVLFSRTGFMSVIEETQYQGTQLAIEEVNEAGGVCGRELVPVAYDPGSDSAAYGHYAKR 104 IG+LFS TG + IE +Q G LA+E++N GGV GR + ++ DPG D Y A+ Sbjct: 10 IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAED 69 Query: 105 LMIEDQVSTIFGCYTSSSRKAVLPVVERLNGLLWYPTLYEGFEASPNVIYTGASPNQNSL 164 + V + GCY S +RKAV+PVVER + LL YPT YEGFE SPN++Y G +PNQNS Sbjct: 70 FIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSA 129 Query: 165 ALCRYLMDTFGTRFYFVGSDYIYPRESNRVMRELLKSNGGSVVGERYVNVYARWQDFVPI 224 L YL+ +G R F+GSDYIYPRESN VMR L + +GG+V+ E Y+ +Y D Sbjct: 130 PLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDVQRA 189 Query: 225 IQDIKRVRPDVIFSTVVGEGTVFLYQAYANVGLDPKQVPIASLTTTEAEIAAMGFDVGEG 284 ++ I + R DV+FSTVVG GT LY+A A D ++ PIASLTT+EAE+A M DV EG Sbjct: 190 VERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDVAEG 249 Query: 285 HVTAASYFQGVEGSANNAFVQRFKKRFGADISTNMCAEASYFQLHLFAKALQQVNSLDTE 344 V A YF ++ +A+ AFVQ F + + AEA+Y+Q L +A Q S E Sbjct: 250 QVVVAPYFSSIDTAASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGSWRVE 309 Query: 345 VLRSMVFGTSFDAPQGAVTVNPMSGHTDLWTRIGRANRQGQFDVVSQSKEPVHADPFLI 403 ++ ++ DAPQG V V + H+ L +RI + +G F V QS EP+ DP+++ Sbjct: 310 DVQRHLYDICIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVV 368 >BH0251 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bha Bacillus halodurans Length = 419 Score = 282 bits (721), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 215/361 (59%), Gaps = 2/361 (0%) Query: 45 IGVLFSRTGFMSVIEETQYQGTQLAIEEVNEAGGVCGRELVPVAYDPGSDSAAYGHYAKR 104 +G+L S +G M++ E + LAIEE+NEAGGV G+ELVP+ D S+ + A + Sbjct: 48 VGILHSLSGTMAMSETSVRDAELLAIEEINEAGGVLGKELVPIIEDGASEPNIFAERATK 107 Query: 105 LMIEDQVSTIFGCYTSSSRKAVLPVVERLNGLLWYPTLYEGFEASPNVIYTGASPNQNSL 164 L+ +D+V+ IFG +TS+SRKA+LPVVE NGLL+YP YEG EASPN+ Y GA+PNQ + Sbjct: 108 LLQQDEVAVIFGGWTSASRKAMLPVVEENNGLLFYPVQYEGMEASPNIFYAGAAPNQQIV 167 Query: 165 ALCRYLMDTFGTRFYFVGSDYIYPRESNRVMRELLKSNGGSVVGERYVNVYARWQDFVPI 224 +L++ GT F+ +GSDY++PR +N +++ L+S+G ++V E+Y + D+ I Sbjct: 168 PAVEWLLENRGTEFFLLGSDYVFPRLANAIIKAQLESHGATLVDEQYTPL--GHTDYNTI 225 Query: 225 IQDIKRVRPDVIFSTVVGEGTVFLYQAYANVGLDPKQVPIASLTTTEAEIAAMGFDVGEG 284 I I+ P VIF+T+ G+ V ++ A+ G+ V + S++ E EI +G DV G Sbjct: 226 ISRIRESEPTVIFNTLNGDSNVAFFKQLADAGITADDVTVMSVSVAEEEIRGIGADVLAG 285 Query: 285 HVTAASYFQGVEGSANNAFVQRFKKRFGADISTNMCAEASYFQLHLFAKALQQVNSLDTE 344 H+ + +YFQ + N+ FV + K FG D T EA Y +HL+A+A++ + D E Sbjct: 286 HLASWNYFQTTDTPENDTFVTAYIKSFGDDRVTGDPIEAGYLMVHLWAQAVEAAGTTDIE 345 Query: 345 VLRSMVFGTSFDAPQGAVTVNPMSGHTDLWTRIGRANRQGQFDVVSQSKEPVHADPFLIG 404 +R F AP G V V+ + H RIG GQF+ V S EPV DPFL Sbjct: 346 AVREAASTIEFSAPGGLVKVDGDNQHLYKTVRIGEVQADGQFEEVWNSGEPVKPDPFLED 405 Query: 405 Y 405 Y Sbjct: 406 Y 406 >slr0447 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Syn Synechocystis Length = 446 Score = 275 bits (704), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 216/373 (57%), Gaps = 10/373 (2%) Query: 36 TQTTSAPWRIGVLFSRTGFMSVIEETQYQGTQLAIEEVNEAGGVCGRELVPVAYDPGSDS 95 T T P ++G+L S +G M++ E T + +LAIEE+N AGGV GR + + D SD Sbjct: 49 TAPTGEPIKVGLLHSLSGTMAISETTVVEAAELAIEEINAAGGVLGRPIEAIKEDGASDW 108 Query: 96 AAYGHYAKRLMIEDQVSTIFGCYTSSSRKAVLPVVERLNGLLWYPTLYEGFEASPNVIYT 155 + A +L+ +D+V +FGC+TS+SRKAVLPV E N +LWYP YEG E S N+ YT Sbjct: 109 PTFAEKAAKLIDQDKVPVVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSKNIFYT 168 Query: 156 GASPNQNSLALCRYLMDTFGTRFYFVGSDYIYPRESNRVMRELLKSNGGSVVGERYVNVY 215 GA+PNQ +L++ G +F+ VGSDY++PR +N +++E LK+ GG +GE Y+ + Sbjct: 169 GAAPNQQIEPAVDWLLENKGNKFFLVGSDYVFPRTANTIIKEQLKAKGGETLGEDYLPLG 228 Query: 216 ARWQDFVPIIQDIKRVRPD--VIFSTVVGEGTVFLYQAYANVGLDPKQVPIASLTTTEAE 273 + PII I+ PD VIF+T+ G+ V ++ GL P + P+ S++ E E Sbjct: 229 N--TEVTPIITKIREALPDGGVIFNTLNGDSNVAFFKQIQAAGLTPDKYPVMSVSVAEEE 286 Query: 274 IAAMGFDVGEGHVTAASYFQGVEGSANNAFVQRFKKRFGADISTNMCAEASYFQLHLFAK 333 + +G + G + +YFQ V+ AN FV FK ++G D TN EA+Y ++L+ Sbjct: 287 VRQIGKEYLLGQFASWNYFQSVDTPANQKFVAAFKAKYGEDRVTNDPMEAAYISVYLWKA 346 Query: 334 ALQQVNSLDT-----EVLRSMVFGTSFDAPQGAVTVNPMSGHTDLWTRIGRANRQGQFDV 388 A++ + E +R+ G +FDAP+G VT+ P + H RIG N +GQF + Sbjct: 347 AVEAAGDVGETPEGLEKVRAAAIGKTFDAPEGMVTMQP-NHHISKTVRIGEVNDEGQFTI 405 Query: 389 VSQSKEPVHADPF 401 V S PV P+ Sbjct: 406 VWSSDGPVDPIPW 418 >all1951 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 438 Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/360 (37%), Positives = 215/360 (59%), Gaps = 5/360 (1%) Query: 44 RIGVLFSRTGFMSVIEETQYQGTQLAIEEVNEAGGVCGRELVPVAYDPGSDSAAYGHYAK 103 +IG+L S +G MS+ E++ +LAI+E+N AGGV G+++ + D S+ + A Sbjct: 56 KIGILHSLSGTMSISEKSVVDAEKLAIKEINAAGGVLGKQIEAIVEDGASNWDTFREKAT 115 Query: 104 RLMIEDQVSTIFGCYTSSSRKAVLPVVERLNGLLWYPTLYEGFEASPNVIYTGASPNQNS 163 +L+ +D+V+ +FGC+TS+SRK V PV E + +LWYP YEG E S N+ YTGA+PNQ Sbjct: 116 KLIDQDKVAVVFGCWTSASRKNVKPVFESKDHMLWYPVQYEGQECSKNIFYTGAAPNQQI 175 Query: 164 LALCRYLMDTFGTRFYFVGSDYIYPRESNRVMRELLKSNGGSVVGERYVNVYARWQDFVP 223 +L+ G F+ VGSDY++PR +N +++ L++ GG VGE Y+ + + P Sbjct: 176 EPSVDWLLKNKGKEFFLVGSDYVFPRTANTIIKAQLEALGGKTVGEDYLPLGN--TEVTP 233 Query: 224 IIQDIKRVRPD--VIFSTVVGEGTVFLYQAYANVGLDPKQVPIASLTTTEAEIAAMGFDV 281 II IK+ P+ VI++T+ G+ V ++ GL P + P S++ E E+ A+G + Sbjct: 234 IISKIKQALPNGGVIYNTLNGDSNVAFFKQLKGAGLTPDKHPSMSVSIAEEEVKAIGVEY 293 Query: 282 GEGHVTAASYFQGVEGSANNAFVQRFKKRFGADISTNMCAEASYFQLHLFAKALQQVNSL 341 +GH A +YFQ V+ AN FV+ FKK +GAD TN EA+Y ++L+ +++++ S Sbjct: 294 LKGHYAAWNYFQTVDTPANKKFVEAFKKEYGADRVTNDPMEAAYIAVYLWKQSVEKAGSP 353 Query: 342 DTEVLRSMVFGTSFDAPQGAVTVNPMSGHTDLWTRIGRANRQGQFDVVSQSKEPVHADPF 401 D +R+ +G + DAP+G VTVN + H RIG G FD++ + PV P+ Sbjct: 354 DLAKVRAAAYGQTIDAPEGKVTVN-TNHHISKIVRIGEVRDDGLFDIIYATPAPVEPVPW 412