BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0086.p (295 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll8317 [K] COG2188 Transcriptional regulators Mlo Mesorhizobium... 254 1e-67 AGl1354GM [K] COG2188 Transcriptional regulators Atu Agrobacteri... 250 3e-66 AGc262 [K] COG2188 Transcriptional regulators Atu Agrobacterium ... 248 1e-65 BMEII0370 [K] COG2188 Transcriptional regulators Bme Brucella me... 242 9e-64 CC0962 [K] COG2188 Transcriptional regulators Ccr Caulobacter vi... 236 3e-62 >mll8317 [K] COG2188 Transcriptional regulators Mlo Mesorhizobium loti Length = 246 Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/228 (54%), Positives = 161/228 (70%) Query: 65 TLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADLIERRRR 124 +L++RI DI +IL+G W PG+RIPFEH+L Y CSRMTVNKALS+LA+A LIERRRR Sbjct: 14 SLHQRILSDISEKILSGAWAPGYRIPFEHELTTEYNCSRMTVNKALSQLAKAGLIERRRR 73 Query: 125 AGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMDKTGKVV 184 +G+FVRRPQ +AVL++ DIR E+ ALG +Y Y+ ++ +R + + DRA LG+ G V+ Sbjct: 74 SGSFVRRPQSQAAVLELHDIRIEVEALGLAYRYERLEQLKRRSNAEDRALLGLSAAGSVL 133 Query: 185 AIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHTISAVVA 244 I H A PFA+E RLI+LS VPEA +F G WL+ VPW+EAEH I A+ A Sbjct: 134 WIEGLHFAGERPFALEQRLINLSAVPEAGDEEFLEIAAGPWLIGRVPWSEAEHRIRAMAA 193 Query: 245 DDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARF 292 D+ A+ALDI GAPCLV++R TW + VT VR YP E+H LVARF Sbjct: 194 DEAIADALDIDPGAPCLVVERRTWSAEHPVTHVRFIYPAESHTLVARF 241 >AGl1354GM [K] COG2188 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 255 Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/233 (52%), Positives = 157/233 (67%) Query: 60 AAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADLI 119 A+ TL++RI DIE RI++GEWPPGHR+PFE L Y CSRMTVNK + +LA+A LI Sbjct: 18 ASAGQTLHQRILSDIEGRIVSGEWPPGHRLPFEVDLADHYHCSRMTVNKVMGQLAKAGLI 77 Query: 120 ERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMDK 179 ERR+++G+FVR+PQ SAVL+I DI AE+ +LG YG+++++C RR+A S DR RL + Sbjct: 78 ERRKKSGSFVRQPQIQSAVLQIHDIGAEVESLGLEYGFKILECARRSAKSEDRERLDVSV 137 Query: 180 TGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHTI 239 ++ I C H A F VE RLI+L+ VPEAA ADF PG WLL HVPW+ AEH I Sbjct: 138 GTALLEIICIHFAGAREFCVEQRLINLAAVPEAAEADFTEIAPGPWLLGHVPWSTAEHRI 197 Query: 240 SAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARF 292 SA A L I+ CLV++R TW ++ VT VR YPG H LVARF Sbjct: 198 SAETPSKEIARLLGISDRQACLVVERRTWSNSGAVTYVRFTYPGNAHALVARF 250 >AGc262 [K] COG2188 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/229 (54%), Positives = 159/229 (69%) Query: 65 TLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADLIERRRR 124 +L++RIR D+E I++GEWPPG+RIPFEH++ +Y CSRMTVNKAL EL Q LIERRRR Sbjct: 12 SLHQRIRNDVERHIMSGEWPPGYRIPFEHEMTRQYGCSRMTVNKALGELVQRGLIERRRR 71 Query: 125 AGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMDKTGKVV 184 GTFVR+P SAVL+I DI E+ A+G YGY+L R R A D A + + V+ Sbjct: 72 LGTFVRQPHAQSAVLEIHDIEREVQAIGLVYGYRLDKRRLRPAGKEDGAAMALAADAPVL 131 Query: 185 AIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHTISAVVA 244 + C H A VPF +E+R+++++ VPEA DF++ PG+WLL VPW+ AEH ISAV A Sbjct: 132 ELTCTHFAGGVPFCLEERIVNIAAVPEAEGTDFSQVGPGTWLLKMVPWSAAEHRISAVSA 191 Query: 245 DDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARFK 293 D + A AL IA GA CLVIDR TW A +T VR+ YPG+ H LVA+F Sbjct: 192 DRKNAVALGIASGAACLVIDRRTWHGADYITRVRVTYPGDRHALVAQFS 240 >BMEII0370 [K] COG2188 Transcriptional regulators Bme Brucella melitensis Length = 247 Score = 242 bits (617), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 122/228 (53%), Positives = 162/228 (71%) Query: 65 TLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADLIERRRR 124 +L++RI DIE+RIL+GEW PGHRIPFEH+L Y CSRMTVNKAL++LA+A LIER+RR Sbjct: 15 SLHQRILDDIESRILSGEWLPGHRIPFEHELTEYYGCSRMTVNKALTQLAKAGLIERKRR 74 Query: 125 AGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMDKTGKVV 184 +G+FV PQ +A+L+I DIR E+ ALG Y ++L++ R + AD RL + + +V Sbjct: 75 SGSFVSFPQSQAAILEIHDIREEVAALGLPYRFELMNRWERLSGPADARRLDIARHTPLV 134 Query: 185 AIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHTISAVVA 244 + CRH A FA+E+R+I+L VP AA DFA+ PG WL+ VPW+ A+HTI A+ A Sbjct: 135 ELLCRHYAGKRVFALEERIINLEAVPAAAETDFAQNSPGPWLVACVPWSSAKHTIRAIAA 194 Query: 245 DDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARF 292 A LDIA G+PCLVI+R TW + + VT VR YPG++H LVARF Sbjct: 195 TQEAAAKLDIAPGSPCLVIERQTWNADQPVTHVRFTYPGDSHALVARF 242 >CC0962 [K] COG2188 Transcriptional regulators Ccr Caulobacter vibrioides Length = 235 Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/230 (53%), Positives = 154/230 (66%) Query: 66 LYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADLIERRRRA 125 L++RIR DIE RI +GEWPPGHR+PFE +LMA Y C+RMTV+KA++ L A LI RR+RA Sbjct: 5 LHQRIRADIEARIRSGEWPPGHRVPFETELMADYGCARMTVSKAMAALVDAGLIVRRKRA 64 Query: 126 GTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMDKTGKVVA 185 GTFV RP+ + VL I DI++EI A G +Y ++L+ R + + GK++A Sbjct: 65 GTFVARPRVHAPVLNIPDIQSEIVARGETYAFRLLSRTLRQPDRDSPEEVALAAGGKLLA 124 Query: 186 IACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHTISAVVAD 245 + H AD PFA+E RL+ L VPE A ADFA+ PPG+WLL HV WTEAE ISAV AD Sbjct: 125 LDGVHDADGRPFALERRLVSLKAVPEIAEADFAQTPPGAWLLEHVAWTEAESRISAVNAD 184 Query: 246 DRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARFKGG 295 A L + GA CLV+DR TWR + VT VR +PGE + LVARF G Sbjct: 185 PDDARLLALDEGAACLVVDRRTWREGQHVTRVRQIFPGEAYDLVARFGPG 234