BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0072.p (331 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value HI1052 [K] COG2207 AraC-type DNA-binding domain-containing prote... 148 2e-35 PA0564 [K] COG2207 AraC-type DNA-binding domain-containing prote... 137 3e-32 ykgD [K] COG2207 AraC-type DNA-binding domain-containing protein... 115 2e-25 ZykgD [K] COG2207 AraC-type DNA-binding domain-containing protei... 114 2e-25 ECs0343 [K] COG2207 AraC-type DNA-binding domain-containing prot... 114 2e-25 >HI1052 [K] COG2207 AraC-type DNA-binding domain-containing proteins Hin Haemophilus influenzae Length = 298 Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 12/306 (3%) Query: 1 MDWLSRLFEMMPVRGRLDLRCSYSVPWRIEQGPGVTNEIPYHAVLAGSAILDDAAGGQPL 60 MD+L +L + VRG +++RC + W+I + +H + G L + Sbjct: 1 MDYLDKLTHLAQVRGEINIRCEFQGEWQISHQEKDAGKGIFHLIEQGECWL--TLNEKQF 58 Query: 61 LLKPGDILLLPGNPRHVMHDGSGA-TPLPARNRAAENFTISENLGSDERLDLLCGHFAIT 119 LK GD+ LP N H MH + +P + F + + L + CG+F Sbjct: 59 HLKEGDVFFLPQNQPHSMHYSANKRADIPTKKSHQGLFELHQIGRGTPDLKMFCGNFYYQ 118 Query: 120 PPHDRLLRNYLPPRLVVHAGTRAGKGTAAQLAGLVSLMRSETADDHLGGLAMLNALSTAM 179 D LL +P L ++ + LV L E + G ++++ALS + Sbjct: 119 Q--DALLTASMPEYLHINLCDTP-------IHPLVQLFLQEAQKNDAGTKSVVDALSNVL 169 Query: 180 FALVLRLASETDATSRGLLALAGDPRLAPAVAAMFKEPARAWSLPELARLCNMSRATLAR 239 +LR A + + +G+L D RL A+ A+ ++P W + +LA L MSRA R Sbjct: 170 LIYILRHAIQQNLIEQGILFALQDKRLNTALIAILQQPQNDWHIEQLAELATMSRANFIR 229 Query: 240 QFQDKLGRSASDLLTDIRMTLAANELKGSSLSTGAVAEMVGYQSEAAFQRAFKSHMGVTP 299 FQ +G S LT +R+ AA LK S S A+A VGYQSEA F + FK++ ++P Sbjct: 230 IFQQHIGMSPGRFLTKVRLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSP 289 Query: 300 AQWRKT 305 +Q+RK+ Sbjct: 290 SQYRKS 295 >PA0564 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 303 Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MDWLSRLFEMMPVRGRLDLRCSYSVPWRIEQGPGVTNEIPYHAVLAGSAILDDAAGGQPL 60 MD L RL ++ ++GRLD RC W +E V E +H V+AG+ + GG+ L Sbjct: 1 MDPLDRLIQLANLQGRLDQRCQLQGSWALEHPQAVPGEATFHIVMAGTCYCEFLDGGR-L 59 Query: 61 LLKPGDILLLPGNPRHVMHDGSGATPLPARNRAAENFTISENLGSDERLDLLCGHFAITP 120 L PGD++LLP H++ S A P + + + G E LD+LCG + Sbjct: 60 DLHPGDLILLPRGTPHLLRSDSPAQPCEPTVEHRGSIPLYQLNGPGEALDMLCGSYRYHA 119 Query: 121 PHDRLLRNYLPPRLVVHAGTRAGKGTAAQLAGLVSLMRSETADDHLGGLAMLNALSTAMF 180 L LP RL+VH + T L L+ LMR E G ++++AL+TA+F Sbjct: 120 GAS--LFGALPERLLVHMD----ESTQQPLRALIGLMREEAESTRSGARSIIDALATALF 173 Query: 181 ALVLRLASETDATSRGLLALAGDPRLAPAVAAMFKEPARAWSLPELARLCNMSRATLARQ 240 AL LR + GL L GD RL A+ AM + P AW+L +LA+ MSRA+ R Sbjct: 174 ALALRAYLDRQPLGDGLFGLLGDARLGRALRAMLERPEHAWTLEQLAQQAAMSRASFVRA 233 Query: 241 FQDKLGRSASDLLTDIRMTLAANELKGSSLSTGAVAEMVGYQSEAAFQRAFKSHMGVTPA 300 F G S +LLT IRM A L+ + S +A GYQSEAAF R F+ G +P Sbjct: 234 FSALGGTSPWNLLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAFGESPG 293 Query: 301 QWRK 304 ++R+ Sbjct: 294 RFRR 297 >ykgD [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 284 Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 140/305 (45%), Gaps = 29/305 (9%) Query: 1 MDWLSRLFEMMPVRGRLDLRCSYSVPWRIEQGPGVTNEIPYHAVLAGSAILDDAAGGQPL 60 MD LSRL + +G +D C W++ G G + I +HA+ G+A L+ G+ Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-MPTGEIF 59 Query: 61 LLKPGDILLLPGNPRHVMHDGSGATPLPARNRAAENFTISENLGSDERLDLLCGHFAITP 120 L+PG+++LLP N H R +N E ++CG + Sbjct: 60 TLRPGNVVLLPQNSAH-------------RLSHVDN----------ESTCIVCGTLRLQ- 95 Query: 121 PHD-RLLRNYLPPRLVVHAGTRAGKGTAAQLAGLVSLMRSETADDHLGGLAMLNALSTAM 179 H R LP L + + + + A + ++ E+ G A+ + + Sbjct: 96 -HSARYFLTSLPETLFLAPVNHSVEYNWLREA--IPFLQQESRSAMPGVDALCSQICATF 152 Query: 180 FALVLRLASETDATSRGLLALAGDPRLAPAVAAMFKEPARAWSLPELARLCNMSRATLAR 239 F L +R T + +L+L PRL + M + P AW++ LA + +MSRA+ A+ Sbjct: 153 FTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQ 212 Query: 240 QFQDKLGRSASDLLTDIRMTLAANELKGSSLSTGAVAEMVGYQSEAAFQRAFKSHMGVTP 299 F+D G + +LT +R+ +AA +L +AE VGY SE++F +AF G TP Sbjct: 213 LFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTP 272 Query: 300 AQWRK 304 ++R+ Sbjct: 273 GEYRE 277 >ZykgD [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 284 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 27/304 (8%) Query: 1 MDWLSRLFEMMPVRGRLDLRCSYSVPWRIEQGPGVTNEIPYHAVLAGSAILDDAAGGQPL 60 MD LSRL + +G +D C W++ G G + I +HA+ G+A L+ G+ Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-MPTGEIF 59 Query: 61 LLKPGDILLLPGNPRHVMHDGSGATPLPARNRAAENFTISENLGSDERLDLLCGHFAITP 120 L+PG+++LLP N H R +N E ++CG + Sbjct: 60 TLRPGNVVLLPQNSAH-------------RLSHVDN----------ESTCIVCGTLRLQH 96 Query: 121 PHDRLLRNYLPPRLVVHAGTRAGKGTAAQLAGLVSLMRSETADDHLGGLAMLNALSTAMF 180 R LP L + + + + A + ++ E+ G A+ + + F Sbjct: 97 S-ARYFLTSLPETLFLAPVNHSVEYNWLREA--IPFLQQESRSAMPGVDALCSQICATFF 153 Query: 181 ALVLRLASETDATSRGLLALAGDPRLAPAVAAMFKEPARAWSLPELARLCNMSRATLARQ 240 L +R T + +L+L PRL + M + P AWS+ LA + +MSRA+ A+ Sbjct: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWSVESLASIAHMSRASFAQL 213 Query: 241 FQDKLGRSASDLLTDIRMTLAANELKGSSLSTGAVAEMVGYQSEAAFQRAFKSHMGVTPA 300 F+D G + +LT +R+ +AA L +AE VGY SE++F +AF G TP Sbjct: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSREMLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 Query: 301 QWRK 304 ++R+ Sbjct: 274 EYRE 277 >ECs0343 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs Escherichia coli O157:H7 Length = 284 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 27/304 (8%) Query: 1 MDWLSRLFEMMPVRGRLDLRCSYSVPWRIEQGPGVTNEIPYHAVLAGSAILDDAAGGQPL 60 MD LSRL + +G +D C W++ G G + I +HA+ G+A L+ G+ Sbjct: 1 MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLE-MPTGEIF 59 Query: 61 LLKPGDILLLPGNPRHVMHDGSGATPLPARNRAAENFTISENLGSDERLDLLCGHFAITP 120 L+PG+++LLP N H R +N E ++CG + Sbjct: 60 TLRPGNVVLLPQNSAH-------------RLSHVDN----------ESTCIVCGTLRLQH 96 Query: 121 PHDRLLRNYLPPRLVVHAGTRAGKGTAAQLAGLVSLMRSETADDHLGGLAMLNALSTAMF 180 R LP L + + + + A + ++ E+ G A+ + + F Sbjct: 97 S-ARYFLTSLPETLFLAPVNHSVEYNWLREA--IPFLQQESRSAMPGVDALCSQICATFF 153 Query: 181 ALVLRLASETDATSRGLLALAGDPRLAPAVAAMFKEPARAWSLPELARLCNMSRATLARQ 240 L +R T + +L+L PRL + M + P AWS+ LA + +MSRA+ A+ Sbjct: 154 TLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWSVESLASIAHMSRASFAQL 213 Query: 241 FQDKLGRSASDLLTDIRMTLAANELKGSSLSTGAVAEMVGYQSEAAFQRAFKSHMGVTPA 300 F+D G + +LT +R+ +AA L +AE VGY SE++F +AF G TP Sbjct: 214 FRDVSGTTPLAVLTKLRLQIAAQMFSREMLPVVVIAESVGYASESSFHKAFVREFGCTPG 273 Query: 301 QWRK 304 ++R+ Sbjct: 274 EYRE 277