BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0070.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1587 [S] COG3059 Predicted membrane protein Vch Vibrio cholerae      61   9e-10
ykgB [S] COG3059 Predicted membrane protein Eco Escherichia coli...    60   2e-09
ZykgB [S] COG3059 Predicted membrane protein EcZ Escherichia col...    60   2e-09
ECs0340 [S] COG3059 Predicted membrane protein Ecs Escherichia c...    60   2e-09

>VC1587 [S] COG3059 Predicted membrane protein Vch Vibrio cholerae
          Length = 146

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 37  IMFLFFGYQKWFPYEFERLVPFISNGPLIWWLYPAFGHAGASYFLGASEWTFGSLLLAGF 96
           ++ ++ G  K+ P E + + P + N PL+ W+Y        S  +GA+E   G  LL G 
Sbjct: 24  LILIWLGIYKFTPTEAKLIEPLVLNHPLMGWIYQFLSIQAVSNLIGATEIIVGIGLLIGL 83

Query: 97  WDKRLGVLGALGSTGTFIATVTIIPFMPDGWDAAAGGFPAMTGNVP--FLMKDVVLLAVS 154
              ++     + S   FI+T++ +   PD W  + G        VP  FL+KD++ LAV+
Sbjct: 84  RSSKVAYYSGIASMVIFISTLSFLITTPDTWKVSDGIL------VPNFFLLKDILFLAVA 137

Query: 155 LYLLRQD 161
           ++++ ++
Sbjct: 138 IHVIEKN 144


>ykgB [S] COG3059 Predicted membrane protein Eco Escherichia coli K12
          Length = 200

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 28/167 (16%)

Query: 30  VVRAAMVIMFLFFGYQKWFPYEFERLVPFISNGPLIWWLYP------------------- 70
           ++R ++ I+F++ G  K+ PYE + + PF++N PL+ + Y                    
Sbjct: 21  LIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEA 80

Query: 71  -----AFGHAGASYFLGASEWTFGSLLLAGFWDKRLGVLGALGSTGTFIATVTIIPFMPD 125
                A    G S  LG  E     L+LA   ++ LG+LG L +  T + T++ +   P+
Sbjct: 81  RAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPE 140

Query: 126 GWDAAAG----GFPAMTGNVPFLMKDVVLLAVSLYLLRQDVVRLIRQ 168
            W  A G    GFP ++G    ++KD ++LA ++ ++      +++Q
Sbjct: 141 AWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQ 187


>ZykgB [S] COG3059 Predicted membrane protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 197

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 28/167 (16%)

Query: 30  VVRAAMVIMFLFFGYQKWFPYEFERLVPFISNGPLIWWLYP------------------- 70
           ++R ++ I+F++ G  K+ PYE + + PF++N PL+ + Y                    
Sbjct: 18  LIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEA 77

Query: 71  -----AFGHAGASYFLGASEWTFGSLLLAGFWDKRLGVLGALGSTGTFIATVTIIPFMPD 125
                A    G S  LG  E     L+LA   ++ LG+LG L +  T + T++ +   P+
Sbjct: 78  RAWQSANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPE 137

Query: 126 GWDAAAG----GFPAMTGNVPFLMKDVVLLAVSLYLLRQDVVRLIRQ 168
            W  A G    GFP ++G    ++KD ++LA ++ ++      +++Q
Sbjct: 138 AWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQ 184


>ECs0340 [S] COG3059 Predicted membrane protein Ecs Escherichia coli O157:H7
          Length = 197

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 28/167 (16%)

Query: 30  VVRAAMVIMFLFFGYQKWFPYEFERLVPFISNGPLIWWLYP------------------- 70
           ++R ++ I+F++ G  K+ PYE + + PF++N PL+ + Y                    
Sbjct: 18  LIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEA 77

Query: 71  -----AFGHAGASYFLGASEWTFGSLLLAGFWDKRLGVLGALGSTGTFIATVTIIPFMPD 125
                A    G S  LG  E     L+LA   ++ LG+LG L +  T + T++ +   P+
Sbjct: 78  RAWQSANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPE 137

Query: 126 GWDAAAG----GFPAMTGNVPFLMKDVVLLAVSLYLLRQDVVRLIRQ 168
            W  A G    GFP ++G    ++KD ++LA ++ ++      +++Q
Sbjct: 138 AWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREILKQ 184