BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0040.p (663 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0362 [G] COG4214 ABC-type xylose transport system, permease... 334 3e-91 AGc4262 [G] COG4214 ABC-type xylose transport system, permease c... 260 7e-69 mll5656 [G] COG4214 ABC-type xylose transport system, permease c... 247 7e-65 SMb20893 [G] COG4214 ABC-type xylose transport system, permease ... 243 1e-63 BH3440 [G] COG4214 ABC-type xylose transport system, permease co... 228 3e-59 >BMEII0362 [G] COG4214 ABC-type xylose transport system, permease component Bme Brucella melitensis Length = 396 Score = 334 bits (857), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 168/226 (74%), Positives = 190/226 (84%) Query: 438 YIPELFPSAGTLYPTSLAIGIVLAFVLVLATARSRAREQAHGIAVEPYAFFIVKSIALAG 497 +IPE+ + +Y TSL IG++LA L+ + RSRAR AH + EP+ F+VK I Sbjct: 171 FIPEVIGTFDGVYLTSLIIGVLLAVFLIWQSMRSRARHIAHEVETEPFGLFVVKCILYFV 230 Query: 498 AVLYFTYLIASHRGLPNVLVIMTALIALYGFVTRRTVIGRQIYAVGGNAKAAKLSGVKTE 557 A+ Y + LI+SHRG+PNVL+IM LIA Y F+T RTVIGRQIYAVGGN AAKLSGVKTE Sbjct: 231 AIAYLSLLISSHRGMPNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTE 290 Query: 558 RLTFFTFVNMGVLAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVGG 617 RLTF TFVNMGVLAALAGLVFAARLNTATPKAG+GFELDVIAACFIGGASAYGGVGRV G Sbjct: 291 RLTFLTFVNMGVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTG 350 Query: 618 AVVGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR 663 AV+GA+IMGVMNNGMSILGIGIDYQQVIKG+VLLGAVCIDVYNQ+R Sbjct: 351 AVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR 396 Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 108/156 (69%), Positives = 128/156 (82%) Query: 1 MTDKTVSLSETPRHSGFIKNNLRNYGMLLSLLAIMLFFEIVTDGTLLQPLNLTNLVLQNS 60 M++ + + ++KNNLR GMLLSL+AIM+FF IVT G L++PLNLTNLVLQNS Sbjct: 1 MSENVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFHIVTGGVLMKPLNLTNLVLQNS 60 Query: 61 YIVIMALGMLLVIVTGHIDLSVGSVAGFVGAVAAVLMVRYHVSYPIAFVACLLVGAAIGA 120 YIVIMALGMLL+IVTGHIDLSVGSV GF+GA+AAV+MV+ + +PIA + CL+VG IGA Sbjct: 61 YIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGA 120 Query: 121 AQGYWVAYFGIPSFIVTLAGMLVFKGLALAVLQGQS 156 QG+WVAYF IPSFIVTLAGMLVFKGL LAVL GQS Sbjct: 121 IQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQS 156 >AGc4262 [G] COG4214 ABC-type xylose transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 398 Score = 260 bits (665), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 137/226 (60%), Positives = 179/226 (79%), Gaps = 1/226 (0%) Query: 438 YIPELFPSAGTLYPTSLAIGIVLAFVLVLATARSRAREQAHGIAVEPYAFFIVKSIALAG 497 ++P++ G L TS+ + +++ L R R HGI VEP+ FFIV+++ ++G Sbjct: 173 FLPDIGGIEG-LNTTSMILTVLITVALFYLAWRRRVVNVKHGIDVEPFGFFIVQNLLISG 231 Query: 498 AVLYFTYLIASHRGLPNVLVIMTALIALYGFVTRRTVIGRQIYAVGGNAKAAKLSGVKTE 557 A+L+ Y ++++RGLPNVL++M LIALY FVTRRT IGR++YA+GGN KA KLSG+ TE Sbjct: 232 AILFLGYQLSTYRGLPNVLIVMLVLIALYSFVTRRTTIGRRVYAMGGNEKATKLSGINTE 291 Query: 558 RLTFFTFVNMGVLAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVGG 617 RL+F TFVNMGVLA LAG++ A RLN+ATPKAG+GFELDVIAACFIGGASA GGVG++ G Sbjct: 292 RLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKITG 351 Query: 618 AVVGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR 663 AV+GA IMGVMNNGMSI+G+GID+QQ++KGLVLL AV DVYN+ + Sbjct: 352 AVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNK 397 Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/154 (59%), Positives = 121/154 (78%) Query: 3 DKTVSLSETPRHSGFIKNNLRNYGMLLSLLAIMLFFEIVTDGTLLQPLNLTNLVLQNSYI 62 + T S +I++N+R YGML++L+AIM+FF+ T G L +P+NLTNL+LQNS+I Sbjct: 5 NTTNEESNVISVGSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFI 64 Query: 63 VIMALGMLLVIVTGHIDLSVGSVAGFVGAVAAVLMVRYHVSYPIAFVACLLVGAAIGAAQ 122 VIMALGMLLVIV GHIDLSVGS+ FVGA+AA+L V++ ++ +A + CL++G IGAAQ Sbjct: 65 VIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQ 124 Query: 123 GYWVAYFGIPSFIVTLAGMLVFKGLALAVLQGQS 156 GYW+AY IPSFIVTLAGMLVF+GL L VL G++ Sbjct: 125 GYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKN 158 >mll5656 [G] COG4214 ABC-type xylose transport system, permease component Mlo Mesorhizobium loti Length = 428 Score = 247 bits (630), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 123/216 (56%), Positives = 160/216 (74%) Query: 448 TLYPTSLAIGIVLAFVLVLATARSRAREQAHGIAVEPYAFFIVKSIALAGAVLYFTYLIA 507 TL+ T++ +G++ R+R + + HG EP+ F++K++ + L+ Y A Sbjct: 212 TLHMTTIVLGLIAVVAYAYFGVRTRRKRERHGYEAEPFPLFVIKTLVASALALFLVYEFA 271 Query: 508 SHRGLPNVLVIMTALIALYGFVTRRTVIGRQIYAVGGNAKAAKLSGVKTERLTFFTFVNM 567 S+RGLP VL++M LI+L+ FVT+R IGR+IYA+GGN KAA+LSG+ TERLT F+NM Sbjct: 272 SYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINTERLTLLVFINM 331 Query: 568 GVLAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVGGAVVGAMIMGV 627 GVL+AL GL+ AARL A P AGLG ELDVIAA FIGGASA GGVG+V GAVVG IMGV Sbjct: 332 GVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVGGFIMGV 391 Query: 628 MNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR 663 MNNGMSI+G+ +D+QQV+KGLVLLGAV DVYN+ + Sbjct: 392 MNNGMSIMGVNVDWQQVVKGLVLLGAVIFDVYNKNK 427 Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 129/181 (71%), Gaps = 9/181 (4%) Query: 5 TVSLSETPRHS-GFIKNNLRNYGMLLSLLAIMLFFEIVTDGTLLQPLNLTNLVLQNSYIV 63 ++ + PR + + NLR YG++++L+ IMLFF+ T GTL +P+NL+NLV QNS+I+ Sbjct: 12 NIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFII 71 Query: 64 IMALGMLLVIVTGHIDLSVGSVAGFVGAVAAVLMVRYH---VSYPIAF-VACLLVGAAIG 119 +MALGMLLVIV+G+IDLSVGSVAGF+GA+AA +MV + +S P+ + CL+VG IG Sbjct: 72 VMALGMLLVIVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIG 131 Query: 120 AAQGYWVAYFGIPSFIVTLAGMLVFKGLALAVLQGQSXFAYQANLLIFGLSALAATLAPS 179 AAQGYW+AY IPSFIVTLAGML+F+G+ A+L G S + G AL++ P Sbjct: 132 AAQGYWIAYHRIPSFIVTLAGMLIFRGICQALLGGGSSVGPLPD----GFKALSSGFIPD 187 Query: 180 M 180 + Sbjct: 188 V 188 >SMb20893 [G] COG4214 ABC-type xylose transport system, permease component Sme Sinorhizobium meliloti Length = 404 Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/199 (63%), Positives = 159/199 (79%) Query: 465 VLATARSRAREQAHGIAVEPYAFFIVKSIALAGAVLYFTYLIASHRGLPNVLVIMTALIA 524 + A R+R + HG EP+ FF ++ ++ L+ + ++++RGLPNVLV+M LIA Sbjct: 203 IFAGVRNRRINEQHGTENEPFVFFAIQMAVISLVALFLGFQLSTYRGLPNVLVVMGVLIA 262 Query: 525 LYGFVTRRTVIGRQIYAVGGNAKAAKLSGVKTERLTFFTFVNMGVLAALAGLVFAARLNT 584 +Y FVT R+ IGR+IYA+GGN KA KLSG+ TERLTF+ FVNMG LAALAG++ ARLN+ Sbjct: 263 VYTFVTTRSTIGRRIYAMGGNEKATKLSGINTERLTFYAFVNMGALAALAGMIITARLNS 322 Query: 585 ATPKAGLGFELDVIAACFIGGASAYGGVGRVGGAVVGAMIMGVMNNGMSILGIGIDYQQV 644 ATPKAG+GFELDVIAACFIGGASA GGVG++ GAV+GA IMGVMNNGMSI+GIGIDYQQ+ Sbjct: 323 ATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIMGIGIDYQQL 382 Query: 645 IKGLVLLGAVCIDVYNQRR 663 IKGLVLL AV DVYN+ + Sbjct: 383 IKGLVLLAAVFFDVYNKNK 401 Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/155 (56%), Positives = 121/155 (78%) Query: 1 MTDKTVSLSETPRHSGFIKNNLRNYGMLLSLLAIMLFFEIVTDGTLLQPLNLTNLVLQNS 60 M T + + P +++NN+R YG+L++L+ IMLFF+ VT+G L +P+N+TNLVLQNS Sbjct: 1 MVADTSTETTKPSIGDYLRNNIREYGLLVALVIIMLFFQFVTNGVLFRPVNITNLVLQNS 60 Query: 61 YIVIMALGMLLVIVTGHIDLSVGSVAGFVGAVAAVLMVRYHVSYPIAFVACLLVGAAIGA 120 +IVIMALGMLL+IV GHIDLSVGS+ F+GA++A+++V++ + + ACL+VG +GA Sbjct: 61 FIVIMALGMLLIIVAGHIDLSVGSIVAFIGAISAIMLVKWGLPAFVVIPACLIVGGIMGA 120 Query: 121 AQGYWVAYFGIPSFIVTLAGMLVFKGLALAVLQGQ 155 AQGYWVAY IPSFIVTLAGMLVF+G+ VL G+ Sbjct: 121 AQGYWVAYQKIPSFIVTLAGMLVFRGMTYVVLGGR 155 >BH3440 [G] COG4214 ABC-type xylose transport system, permease component Bha Bacillus halodurans Length = 388 Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/227 (54%), Positives = 168/227 (74%), Gaps = 1/227 (0%) Query: 438 YIPEL-FPSAGTLYPTSLAIGIVLAFVLVLATARSRAREQAHGIAVEPYAFFIVKSIALA 496 ++P++ F + + ++ IG+VL+ ++ + + R + + V P FFI K I + Sbjct: 160 FLPDIPFLGLASYHTLTMLIGVVLSLFVIFSELKERRVQINNQFMVLPKGFFIAKLIGMV 219 Query: 497 GAVLYFTYLIASHRGLPNVLVIMTALIALYGFVTRRTVIGRQIYAVGGNAKAAKLSGVKT 556 + FT+++AS+RG+PN+LVI+ LI L+ FV +TVIGR IYA GGN KAA+LSGVKT Sbjct: 220 AIINIFTFVLASYRGIPNILVILFVLIVLFSFVMNKTVIGRHIYATGGNQKAAELSGVKT 279 Query: 557 ERLTFFTFVNMGVLAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVG 616 +R+TF+ FVNMG L+A+AGL++AARLN+ATP+AG FELD IAA FIGGAS GGVG + Sbjct: 280 KRVTFWVFVNMGFLSAMAGLIYAARLNSATPRAGTMFELDAIAAAFIGGASMAGGVGTIV 339 Query: 617 GAVVGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR 663 GAVVG ++MGVMNNGMS+LGI ID+QQ IKGLVLL AV D+YN+ + Sbjct: 340 GAVVGGLVMGVMNNGMSLLGISIDWQQAIKGLVLLAAVGFDIYNRNK 386 Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 151/226 (66%), Gaps = 8/226 (3%) Query: 18 IKNNLRNYGMLLSLLAIMLFFEIVTDGTLLQPLNLTNLVLQNSYIVIMALGMLLVIVTGH 77 +KNN+R+YGM+++L+ I+L F +++DG LL+PLN+TNL+LQNSYI+++A+GM++VI+ GH Sbjct: 7 LKNNMRSYGMIVALMFIILLFSVLSDGILLRPLNVTNLILQNSYILVLAIGMVMVIIAGH 66 Query: 78 IDLSVGSVAGFVGAVAAVLMVRYHVSYPIAFVACLLVGAAIGAAQGYWVAYFGIPSFIVT 137 IDLSVGSV FVGA+AA+LM+ + +A + CLL+GA IGA G+++AY +PSFIVT Sbjct: 67 IDLSVGSVCAFVGAIAAILMIDMQLPTALAVLICLLLGALIGAWHGFFIAYLKMPSFIVT 126 Query: 138 LAGMLVFKGLALAVLQGQSXFAYQANLLIFGLSALAATLAPSMNWLIGARFVMGLGLGAE 197 LAGML+F+GL + VL GQS Y ++ +++ P + +L A + L Sbjct: 127 LAGMLLFRGLTMVVLGGQSKSPYPPEFIL-----ISSGFLPDIPFLGLASYHTLTMLIGV 181 Query: 198 IVVGYVVLSEFIPPQQRGRWGAALATCTNGALFVATLVGWVVIPHL 243 ++ +V+ SE ++R + G F+A L+G V I ++ Sbjct: 182 VLSLFVIFSEL--KERRVQINNQFMVLPKG-FFIAKLIGMVAIINI 224