BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0025.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20196 [O] COG0464 ATPases of the AAA+ class Sme Sinorhizobium... 419 e-117 BS_spoVK [O] COG0464 ATPases of the AAA+ class Bsu Bacillus subt... 201 1e-51 BH2363 [O] COG0464 ATPases of the AAA+ class Bha Bacillus halodu... 195 1e-49 BH2289 [O] COG0464 ATPases of the AAA+ class Bha Bacillus halodu... 176 4e-44 MT3981_2 [O] COG0464 ATPases of the AAA+ class MtC Mycobacterium... 158 1e-38 >SMb20196 [O] COG0464 ATPases of the AAA+ class Sme Sinorhizobium meliloti Length = 311 Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/285 (70%), Positives = 236/285 (82%) Query: 15 TIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTFPTLH 74 ++DL E+ G+ ++LD+LD EL+GLKPVK RIRE A+LLLVER R+ M L+ P+LH Sbjct: 16 SVDLAGEYQASGVAEILDELDRELVGLKPVKQRIRETAALLLVERARRAMGLSHEPPSLH 75 Query: 75 MSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKA 134 MSFTGNPGTGKTTVALRMA +LHRLG++R+GH++SVTRDDLVGQYIGHTAPKTKEILKKA Sbjct: 76 MSFTGNPGTGKTTVALRMANLLHRLGYIRKGHLVSVTRDDLVGQYIGHTAPKTKEILKKA 135 Query: 135 MGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFFQSNP 194 MGGVLFIDEAYYLYRP+NERDYGQEAIEILLQVME R+DLVVILAGY DRM++FF+SNP Sbjct: 136 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMDRFFESNP 195 Query: 195 GFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLFSNAR 254 GFRSRIAHHIDFPDY +GELL IAE ML +Q YRF +A YIA R+ QP F+NAR Sbjct: 196 GFRSRIAHHIDFPDYDNGELLSIAESMLSRQGYRFDSKASAVMSDYIARRRRQPHFANAR 255 Query: 255 SIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFG 299 SIRNALDR RLRQANR+ + + A+ + +I A D+ ASRVF Sbjct: 256 SIRNALDRARLRQANRLFEESAGPVDAEQLSTITARDIAASRVFA 300 >BS_spoVK [O] COG0464 ATPases of the AAA+ class Bsu Bacillus subtilis Length = 322 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/278 (39%), Positives = 173/278 (62%), Gaps = 6/278 (2%) Query: 18 LRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTFPTLHMSF 77 L+ A GI +++ S L+G++ +K I+EI + + V + R + L LHM F Sbjct: 38 LQKNEAKHGILKEIEKEMSALVGMEEMKRNIKEIYAWIFVNQKRAEQGLKVGKQALHMMF 97 Query: 78 TGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKAMGG 137 GNPGTGKTTVA + + + + +GH+I R DLVG+YIGHTA KT++++KK++GG Sbjct: 98 KGNPGTGKTTVARLIGKLFFEMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKSLGG 157 Query: 138 VLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFFQSNPGFR 197 + FIDEAY L R E+D+G+EAI+ L++ ME ++ + ++ILAGY M+ F NPG + Sbjct: 158 IWFIDEAYSLARG-GEKDFGKEAIDTLVKHMEDKQHEFILILAGYSREMDHFLSLNPGLQ 216 Query: 198 SRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKE--QPL-FSNAR 254 SR IDFPDYS +L+ IA+ M+ ++ Y+ S EA Y+ K P+ FSN R Sbjct: 217 SRFPISIDFPDYSVTQLMEIAKRMIDEREYQLSQEAEWKLKDYLMTVKSTTSPIKFSNGR 276 Query: 255 SIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDV 292 +RN +++ QA R++ D+ L + D+M+I++ D+ Sbjct: 277 FVRNVIEKSIRAQAMRLLMG-DQYLKS-DLMTIKSQDL 312 >BH2363 [O] COG0464 ATPases of the AAA+ class Bha Bacillus halodurans Length = 315 Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 158/248 (63%), Gaps = 6/248 (2%) Query: 30 VLDQLDSEL---IGLKPVKTRIREIASLLLVERIRQKMALATTFPTLHMSFTGNPGTGKT 86 VL++++ EL +GL VK I+E+ + + + + R + L + LHM F GNPGTGKT Sbjct: 42 VLEKMERELKKYVGLDEVKRLIKEVYAWIYINQCRTEQGLRASKQALHMIFKGNPGTGKT 101 Query: 87 TVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKAMGGVLFIDEAYY 146 TVA +A + + +G +I R DLVG+YIGHTA KT+E++KKA GGVLF+DEAY Sbjct: 102 TVARLIARFFRDMNVLSKGQLIEAERADLVGEYIGHTAQKTRELIKKAQGGVLFVDEAYS 161 Query: 147 LYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFFQSNPGFRSRIAHHIDF 206 L R E+D+G+EAI+ L++ ME Q+ + V+ILAGY D M+ F NPG SR +DF Sbjct: 162 LARG-GEKDFGKEAIDTLVKAMEDQQHEFVLILAGYSDEMDYFLSLNPGLPSRFPIAMDF 220 Query: 207 PDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIA-VRK-EQPLFSNARSIRNALDRIR 264 P+Y+ +L+ I + M++++ Y+ + A+ ++ VR+ E FSN R IRN ++ Sbjct: 221 PNYTTDQLMQIVKNMVKEREYQLTKRAQHLIREHVTKVRQYEGRTFSNGRYIRNMIEEAI 280 Query: 265 LRQANRIV 272 RQA R++ Sbjct: 281 RRQAVRLL 288 >BH2289 [O] COG0464 ATPases of the AAA+ class Bha Bacillus halodurans Length = 775 Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/267 (38%), Positives = 158/267 (59%), Gaps = 7/267 (2%) Query: 30 VLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTFPTLHMSFTGNPGTGKTTVA 89 +D+L+ +LIGL VK ++++ S V+++R+ + T LH F+GNPGTGKTTVA Sbjct: 511 AIDRLE-QLIGLADVKRELKQLTSFAKVQQMRRDKGMTTIPIQLHSIFSGNPGTGKTTVA 569 Query: 90 LRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKAMGGVLFIDEAYYLYR 149 A L +G ++RGHV V+R DLV ++G TA KTKE ++ A+GGVLFIDEAY L++ Sbjct: 570 KLFAEALQEIGLLKRGHVSIVSRSDLVAGFVGQTALKTKERIRDALGGVLFIDEAYSLFK 629 Query: 150 PENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFFQSNPGFRSRIAHHIDFPDY 209 +D+G+EA++ L+ M +Q E+LVVI+AGY ME+ +NPG +SR F DY Sbjct: 630 --GGQDFGKEAVDTLVDEMTKQGENLVVIMAGYPKEMEELLTANPGLKSRFKKVFTFADY 687 Query: 210 SHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLFSNARSIRNALDRIRLRQAN 269 + EL + + +Q Y EAR + + E SN R + L+R RQA Sbjct: 688 TKAELQAMIDYHSEQYGYHLDEEARRQVGQLLP---ESGHPSNGRFAVDLLERAIQRQAI 744 Query: 270 RIVAKLDRTLTADDVMSIEAGDVLASR 296 RI +++ ++ + +M++ D + + Sbjct: 745 RIT-EIEEDISEEQLMTLTGRDFIEEK 770 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 128/234 (54%), Gaps = 7/234 (2%) Query: 31 LDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTFP-TLHMSFTGNPGTGKTTVA 89 LD+L+ +++GL+ VK R+ L + R+K +LHM TGNPGTGKT +A Sbjct: 236 LDELE-KMVGLEDVKRRVHHHYQFLKYQAERKKAGYQFLDEMSLHMILTGNPGTGKTRLA 294 Query: 90 LRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKAMGGVLFIDEAYYLYR 149 A + + LG + R V+ V R LVG ++G + TK +++KA GGVLFIDEAY L R Sbjct: 295 RLFAQLYYELGLLERNEVLEVDRSQLVGGFVGQSEENTKALIEKAAGGVLFIDEAYSLKR 354 Query: 150 P-ENERDYGQEAIEILLQVMEQQRE--DLVVILAGYGDRMEKFFQSNPGFRSRI--AHHI 204 + DYGQ I+ L+ M + +ILAGY ME+F +SNPG RSR + I Sbjct: 355 EGASGNDYGQAVIDTLVAAMTSGKYAGTFALILAGYPVEMEQFLRSNPGLRSRFPEQNQI 414 Query: 205 DFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLFSNARSIRN 258 DYS ELL I E + ++ + AR A + I + F N R+++N Sbjct: 415 HLSDYSIDELLLIGEQVALDNDFTLTDGARLALKQRIEEAQVDESFGNGRTVKN 468 >MT3981_2 [O] COG0464 ATPases of the AAA+ class MtC Mycobacterium tuberculosis CDC1551 Length = 280 Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 39 IGLKPVKTRIREIASLLLVERIRQKMALATTFPTLHMSFTGNPGTGKTTVALRMAGILHR 98 IGL VK +I + L+ R+R + P+ HM FTG PGTGKTT+A +A IL Sbjct: 1 IGLTRVKNQIERYRAATLMARVRAAKGMKVAQPSKHMIFTGPPGTGKTTIARVVANILAG 60 Query: 99 LGFVRRGHVISVTRDDLVGQYIGHTAPKTKEILKKAMGGVLFIDEAYYLYRPENERD--Y 156 LG + ++ +R D V +Y G +A KT + + +A+GGVLFIDEAY L + + R + Sbjct: 61 LGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGGVLFIDEAYALVQERDGRTDPF 120 Query: 157 GQEAIEILLQVMEQQREDLVVILAGYGDRMEKFFQSNPGFRSRIAHHIDFPDYSHGELLW 216 GQEA++ LL ME R+ LVVI+AGY +++ ++N G RSR A I+F YS ELL Sbjct: 121 GQEALDTLLARMENDRDRLVVIIAGYSSDIDRLLETNEGLRSRFATRIEFDTYSPEELLE 180 Query: 217 IAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLFSNARSI 256 IA ++ + + EA E F++ A + EQ + R++ Sbjct: 181 IANVIAAADDSALTAEAAENFLQA-AKQLEQRMLRGRRAL 219