BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0022.p         (172 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20198 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, larg...   268   4e-72
alr1524 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large...   185   3e-47
slr0009 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large...   183   2e-46
AF1638 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large ...   114   1e-25
PAB1580 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large...    95   9e-20

>SMb20198 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
           Sme Sinorhizobium meliloti
          Length = 486

 Score =  268 bits (685), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 142/162 (87%)

Query: 7   VRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGESSTAT 66
           ++G++RYK+GV++Y +MGYW  +YEPKDTD+IALFR+TPQDGVDP EA AAVAGESSTAT
Sbjct: 9   IKGRERYKAGVLKYAQMGYWNGDYEPKDTDLIALFRITPQDGVDPIEAAAAVAGESSTAT 68

Query: 67  WTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASIIGNVF 126
           WTVVWTDRL A ++YRAK YRVDPVP +PG YF Y+AYDL LFE GSI+NLTASIIGNVF
Sbjct: 69  WTVVWTDRLTACDQYRAKAYRVDPVPGTPGQYFCYVAYDLILFEEGSIANLTASIIGNVF 128

Query: 127 GFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPKQKK 168
            FKPLKA RLEDMRLP AYVKTF+GP TGIVVERERL K  K
Sbjct: 129 SFKPLKAARLEDMRLPVAYVKTFRGPPTGIVVERERLDKFGK 170


>alr1524 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
           Nos Nostoc sp. PCC 7120
          Length = 476

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 1/156 (0%)

Query: 10  KDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGESSTATWTV 69
           K  YK+GV +Y R+ Y+ P+Y PKDTD++A FRVTPQ GV   EA AAVA ESST TWT 
Sbjct: 11  KSGYKAGVQDY-RLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAESSTGTWTT 69

Query: 70  VWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASIIGNVFGFK 129
           VWTD L   ++Y+ +CY ++PVP     + AYIAY LDLFE GSI+N+  SI+GNVFGFK
Sbjct: 70  VWTDLLTDLDRYKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTSIVGNVFGFK 129

Query: 130 PLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
            L+ALRLED+R P AY+KTFQGP  GI VER++L K
Sbjct: 130 ALRALRLEDIRFPVAYIKTFQGPPHGIQVERDKLNK 165


>slr0009 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
           Syn Synechocystis
          Length = 470

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 119/159 (74%), Gaps = 1/159 (0%)

Query: 7   VRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGESSTAT 66
           V+ K  +K+GV +Y R+ Y+ P+Y PKDTD++A FR+TPQ GV   EA AAVA ESST T
Sbjct: 2   VQAKAGFKAGVQDY-RLTYYTPDYTPKDTDLLACFRMTPQPGVPAEEAAAAVAAESSTGT 60

Query: 67  WTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASIIGNVF 126
           WT VWTD L   ++Y+ +CY ++ VPN    YFA+IAY LDLFE GS++N+  S++GNVF
Sbjct: 61  WTTVWTDNLTDLDRYKGRCYDLEAVPNEDNQYFAFIAYPLDLFEEGSVTNVLTSLVGNVF 120

Query: 127 GFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           GFK L+ALRLED+R P A +KTFQGP  GI VER++L K
Sbjct: 121 GFKALRALRLEDIRFPVALIKTFQGPPHGITVERDKLNK 159


>AF1638 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
           Afu Archaeoglobus fulgidus
          Length = 441

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 84/133 (63%), Gaps = 5/133 (3%)

Query: 25  YWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGESSTATWTVV--WTDRLKAAEKYR 82
           Y + +YEP+  D++A+FR+TP +G    +A  AVA ESST TWT +  W D  +  +   
Sbjct: 10  YVDKSYEPQKDDIVAVFRITPAEGFTIEDAAGAVAAESSTGTWTSLHPWYDEERV-KGLS 68

Query: 83  AKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASIIGNVFGFKPLKALRLEDMRLP 142
           AK Y  D V    GS    IAY  +LFEP ++  L ASI GNVFG K +K LRLED++LP
Sbjct: 69  AKAY--DFVDLGDGSSIVRIAYPSELFEPHNMPGLLASIAGNVFGMKRVKGLRLEDLQLP 126

Query: 143 TAYVKTFQGPATG 155
            +++K F+GP+ G
Sbjct: 127 KSFLKDFKGPSKG 139


>PAB1580 [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit
           Pab Pyrococcus abyssi
          Length = 424

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 29  NYEPKDTDVIALFRVTPQDGVDPTEACAAVAGESSTATWTVVWTDRLKAAEKYRAKCYRV 88
           NYEP   ++I  +   P +GV P EA   +A ESS  TWT +W    K  E  +    +V
Sbjct: 17  NYEPGRDELIVEYYFEP-NGVSPEEAAGRIASESSIGTWTTLW----KLPEMAKRSMAKV 71

Query: 89  DPVPNSPGSYFAYIAYDLDLFEPGSISNLTASIIGNVFGFKPLKALRLEDMRLPTAYVKT 148
             +      Y A IAY L LFE GS+  L ++I GNVFG K LK LRL D   P  Y++ 
Sbjct: 72  FYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAIAGNVFGMKALKNLRLLDFHPPYEYLRH 131

Query: 149 FQGPATGIVVERE 161
           F+GP  G+   RE
Sbjct: 132 FKGPQFGVKGIRE 144