BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0008.p (232 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1340 [E] COG0765 ABC-type amino acid transport system, permeas... 241 8e-64 STM0663 [E] COG0765 ABC-type amino acid transport system, permea... 218 1e-56 YPO2613 [E] COG0765 ABC-type amino acid transport system, permea... 217 2e-56 gltK [E] COG0765 ABC-type amino acid transport system, permease ... 216 3e-56 ZgltK [E] COG0765 ABC-type amino acid transport system, permease... 216 3e-56 >PA1340 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 222 Score = 241 bits (616), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 125/223 (56%), Positives = 159/223 (71%), Gaps = 3/223 (1%) Query: 8 DFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGFYVDFI 67 DF I +LP L+ EGM TL L L GG+ GT++ALMRLS K+L IAGFYV++ Sbjct: 3 DFSGIVPALPSLW-EGMLMTLKLMVLGVLGGVALGTVLALMRLSHSKLLSNIAGFYVNYF 61 Query: 68 RSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMRAGIQS 127 RS+PL+LVI WFYF VP+I +W+TG P VGAF S L+ F+ FEAAY+ EI+RAGIQ+ Sbjct: 62 RSIPLLLVITWFYFAVPFILRWITGEDTP--VGAFTSCLVAFMMFEAAYYCEIVRAGIQA 119 Query: 128 ISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSIPDFLG 187 I KGQ AA ALG+TY Q+MR V+LPQAFR M P+LL Q+I+LFQDTSLVY + + DFL Sbjct: 120 IPKGQMGAAQALGMTYGQTMRLVILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLMDFLN 179 Query: 188 AASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAI 230 +A G+ E +FA LVYFV+S AS+ V+RLQ R+ + Sbjct: 180 SARSRGDIIGQANEFLIFAGLVYFVVSFTASFAVKRLQKRLTV 222 >STM0663 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 224 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 156/222 (70%), Gaps = 2/222 (0%) Query: 6 SFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGFYVD 65 FD+ I SLPYL L G+ TL +T A G+V+GT++A+MRLSS+ + A YV+ Sbjct: 3 EFDWSSIIPSLPYL-LAGLVITLKITVTAVIVGIVWGTILAVMRLSSFAPIAWFAKAYVN 61 Query: 66 FIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMRAGI 125 RS+PLV+V+ WFY +VP Q + G S P T S+++ F FEAAY+SEI+RAGI Sbjct: 62 VFRSIPLVMVLLWFYLIVPGFLQNVLGLS-PKTDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 126 QSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSIPDF 185 QSIS+GQ +AA ALG+T+ QSM+ ++LPQAFR M+P+LLTQ IVLFQDTSLVYVLS+ DF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 186 LGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQAR 227 AS + +RDG VEM LFA VYFVIS AS V L+ R Sbjct: 181 FRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSYLKKR 222 >YPO2613 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 224 Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 157/222 (70%), Gaps = 2/222 (0%) Query: 6 SFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGFYVD 65 FD+ I SLPYL L+G+ T+ +T +A G+++GT++A+MRLS K + A YV+ Sbjct: 3 EFDWSSIAPSLPYL-LQGLIVTVKITLIAIVFGILWGTILAVMRLSPIKAISWFATAYVN 61 Query: 66 FIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMRAGI 125 RS+PLV+V+ WFY +VP Q + G S P T S+++ F FEAAY+SEI+RAGI Sbjct: 62 VFRSIPLVMVLLWFYLVVPGFLQNVLGLS-PKTDIRLISAMVAFSLFEAAYYSEIIRAGI 120 Query: 126 QSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSIPDF 185 QSIS+GQ +AA ALG+T QSMR V+LPQAFR M+P+LLTQ IVLFQDTSLVYVLS+ DF Sbjct: 121 QSISRGQSSAALALGMTQGQSMRLVILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 186 LGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQAR 227 A+ + +RDG VEM LFA LVYFVIS AS V L+ R Sbjct: 181 FRTATTIGERDGTQVEMVLFAGLVYFVISISASMLVNYLKKR 222 >gltK [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 224 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/224 (54%), Positives = 157/224 (70%), Gaps = 2/224 (0%) Query: 6 SFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGFYVD 65 FD+ I SLPYL L+G+ TL +T A G+++GT++A+MRLSS+ + A YV+ Sbjct: 3 EFDWSSIVPSLPYL-LDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYVN 61 Query: 66 FIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMRAGI 125 RS+PLV+V+ WFY +VP Q + G S P S+++ F FEAAY+SEI+RAGI Sbjct: 62 VFRSIPLVMVLLWFYLIVPGFLQNVLGLS-PKNDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 126 QSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSIPDF 185 QSIS+GQ +AA ALG+T+ QSM+ ++LPQAFR M+P+LLTQ IVLFQDTSLVYVLS+ DF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 186 LGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIA 229 AS + +RDG VEM LFA VYFVIS AS V L+ R A Sbjct: 181 FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRRTA 224 >ZgltK [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/224 (54%), Positives = 157/224 (70%), Gaps = 2/224 (0%) Query: 6 SFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGFYVD 65 FD+ I SLPYL L+G+ TL +T A G+++GT++A+MRLSS+ + A YV+ Sbjct: 3 EFDWSSIVPSLPYL-LDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYVN 61 Query: 66 FIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMRAGI 125 RS+PLV+V+ WFY +VP Q + G S P S+++ F FEAAY+SEI+RAGI Sbjct: 62 VFRSIPLVMVLLWFYLIVPGFLQNVLGLS-PKNDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 126 QSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSIPDF 185 QSIS+GQ +AA ALG+T+ QSM+ ++LPQAFR M+P+LLTQ IVLFQDTSLVYVLS+ DF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 186 LGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIA 229 AS + +RDG VEM LFA VYFVIS AS V L+ R A Sbjct: 181 FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRRTA 224