BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0007.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2614 [E] COG0765 ABC-type amino acid transport system, permea... 252 6e-67 RSc0482 [E] COG0765 ABC-type amino acid transport system, permea... 252 6e-67 PA1341 [E] COG0765 ABC-type amino acid transport system, permeas... 243 2e-64 STM0664 [E] COG0765 ABC-type amino acid transport system, permea... 243 4e-64 gltJ [E] COG0765 ABC-type amino acid transport system, permease ... 239 4e-63 >YPO2614 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 246 Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 172/243 (70%), Gaps = 3/243 (1%) Query: 4 NWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRTASW 63 +WNW IFL+P P G TYL + +G VT+ +S+ AW+IA GS+ G+LRT+P+R S Sbjct: 4 DWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRILSG 63 Query: 64 IGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQ--LPNAPFW-TAAIGVGFFMS 120 IG C+VE FRN+PL+VQ W+ V+PELLP + G W K PN F+ ++ I +G F + Sbjct: 64 IGACYVELFRNVPLIVQFLTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGLFTA 123 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 ARV Q++AGI SLPRGQK A A+GLT QTYRYVLLP A+R+I+PP+TSE LN +KNS Sbjct: 124 ARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVLLPNAYRVIIPPMTSEMLNLVKNS 183 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPGYI 240 A+A TIGL+E+ QA + ++S +E+FTA T+ Y+L+N V++ MR +E+ V +PG + Sbjct: 184 AIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLPGNL 243 Query: 241 TGK 243 K Sbjct: 244 GSK 246 >RSc0482 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 242 Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 128/245 (52%), Positives = 176/245 (71%), Gaps = 5/245 (2%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NY+WNW +F TYLD LL+GL TI + + +WIIALV GSV+GVLRT+PS+ Sbjct: 1 MNYHWNWGVFFTEAAQNQ-TYLDWLLSGLKTTIALGLSSWIIALVLGSVLGVLRTVPSKA 59 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQL--PNAPFWTAAIGVGFF 118 S + +VE FRN+PL+VQLF+W+FV+PEL+P G ++KQ+ A F A + +G F Sbjct: 60 LSGLATAYVELFRNIPLIVQLFIWYFVMPELVP--GGDYIKQMNPATAMFLCAMLCLGTF 117 Query: 119 MSARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIK 178 +ARV Q+++GI SLPRGQ+ A A+G T QTYR+V+LPMAFRII+PPLTSEFLN K Sbjct: 118 TAARVCEQVRSGINSLPRGQRNAGLAMGFTLAQTYRHVMLPMAFRIIVPPLTSEFLNIFK 177 Query: 179 NSAVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPG 238 NSAVA TIGL+EL Q R + +++ Q +E+F A T++Y+L+N V+ MR++E +PG Sbjct: 178 NSAVASTIGLLELAAQGRQLVDYTAQPYESFIAVTLMYMLINLTVMGIMRWVEARTRLPG 237 Query: 239 YITGK 243 +I GK Sbjct: 238 FIGGK 242 >PA1341 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 248 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/244 (50%), Positives = 169/244 (69%), Gaps = 3/244 (1%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NYNW+W +F + +G+ TYLD +AGL TI ++++ WIIAL GS++GV+RT+P+R Sbjct: 1 MNYNWDWGVFFKSTGIGSETYLDWYIAGLGWTIAIALVGWIIALALGSLLGVMRTVPNRL 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPN---APFWTAAIGVGF 117 S I +VE FRN+PLLVQLF+W+F++P+LLP W KQ N + + + + +G Sbjct: 61 VSGIATAYVEIFRNVPLLVQLFIWYFLVPDLLPEGLQTWFKQDLNPTTSAYLSVVVCLGL 120 Query: 118 FMSARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTI 177 F +ARV Q++ GI +LP GQ A+ A+G Q YR+VLLP AFRII+PPLTSEFLN Sbjct: 121 FTAARVCEQVRTGIQALPYGQTSAARAMGFRLPQIYRHVLLPQAFRIIIPPLTSEFLNIF 180 Query: 178 KNSAVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIP 237 KNS+VA IGL+EL Q + EFS +FEAFT AT++Y LN ++ MR +ER VA+P Sbjct: 181 KNSSVASLIGLMELLAQTKQTAEFSANLFEAFTLATLIYFTLNMSLMLIMRLVERKVAVP 240 Query: 238 GYIT 241 G I+ Sbjct: 241 GLIS 244 >STM0664 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 246 Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/243 (49%), Positives = 170/243 (69%), Gaps = 3/243 (1%) Query: 4 NWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRTASW 63 +WNW IFL+ P G TYL L +G VT+ +S+ AWIIA + GS+ G+LRT+P+R S Sbjct: 4 DWNWGIFLQEAPFGNTTYLGWLWSGFQVTVALSITAWIIAFLVGSIFGILRTVPNRFLSG 63 Query: 64 IGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQL--PNAPFW-TAAIGVGFFMS 120 +G +VE FRN+PL+VQ F W+ V+PELLP G+W K PN F+ ++ I +G F + Sbjct: 64 LGTLYVELFRNVPLIVQFFTWYLVVPELLPEDLGMWFKAELDPNIQFFLSSMICLGLFTA 123 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 ARV Q++A I SLPRGQK A+ A+GLT Q YRYVLLP A+R+I+PP+TSE +N +KNS Sbjct: 124 ARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLVKNS 183 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPGYI 240 A+A TIGL+++ QA + ++S +E+FTA T+ Y+L+N V++ M +ER V +PG + Sbjct: 184 AIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAVIMLVMSLVERKVRLPGNV 243 Query: 241 TGK 243 K Sbjct: 244 GSK 246 >gltJ [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 246 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%) Query: 4 NWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRTASW 63 +WNW IFL+ P G TYL + +G VTI +S+ AWIIA + GS G+LRT+P+R S Sbjct: 4 DWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRFLSG 63 Query: 64 IGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQL--PNAPFW-TAAIGVGFFMS 120 +G +VE FRN+PL+VQ F W+ V+PELLP G+W K PN F+ ++ + +G F + Sbjct: 64 LGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGLFTA 123 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 ARV Q++A I SLPRGQK A+ A+GLT Q YRYVLLP A+R+I+PP+TSE +N +KNS Sbjct: 124 ARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLVKNS 183 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPGYI 240 A+A TIGL+++ QA + ++S +E+FTA T+ Y+L+N ++ M +ER V +PG + Sbjct: 184 AIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAFIMLVMTLVERKVRLPGNM 243 Query: 241 TGK 243 GK Sbjct: 244 GGK 246