BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0006.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1342 [ET] COG0834 ABC-type amino acid transport/signal transdu... 319 4e-87 RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transd... 293 5e-79 PA5082 [ET] COG0834 ABC-type amino acid transport/signal transdu... 289 6e-78 ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduc... 263 3e-70 ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transd... 263 3e-70 >PA1342 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 302 Score = 319 bits (818), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 164/291 (56%), Positives = 209/291 (71%), Gaps = 2/291 (0%) Query: 6 LIGLALAAAVGASQAQAQELTGTLKNIKDTGAITLGYRDSSIPFSYLD-DNQKPVGYAME 64 L+ A+ AA+ ++ A ELTGTLK IK+TG ITLG+RD+SIPFSYL + KP+GY+ + Sbjct: 7 LLSTAIVAALLSAPVVADELTGTLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGYSHD 66 Query: 65 ICYKIVDAVKKELKLDKLEVKLNPVTSATRIPLMANGTVDLECGSTTNNAERQKQVSFTN 124 + K+V+AVKKEL L +L+V+ N VTS TRIPL+ NGTVD+ECGSTTNN ERQKQV F+ Sbjct: 67 LQLKVVEAVKKELNLPELKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSV 126 Query: 125 SHFLTASRYVTKKASKINSIDDLKGKTVVSTAGTTNIKQLTEANLARGLSVNIIPAKDHA 184 F +R ++KK + I DDLKGK VV+TAGTT+ + L N + + +NII AKDH Sbjct: 127 GIFEVGTRLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHG 186 Query: 185 EAFLMVETDRAVAFVMDDILLASLVAGSKSPDDYVISKDAFSKPEPYGIMLRKDDAPFKK 244 E+F+M+E+ RAVAF+MDD LL +A +K PDD+V+ S E YG M+RK DA FKK Sbjct: 187 ESFMMLESGRAVAFMMDDALLYGEMAKAKKPDDWVVGGTPQSF-EIYGCMVRKGDAAFKK 245 Query: 245 VVDAATAALYTSAEGQKIYDKWFTQKIPPKGLNLNVPLGPEMKKQLAKPSD 295 VVD A Y S E KIYDKWFTQ IPPKGLNLN P+ E+KK +A P+D Sbjct: 246 VVDKAITDTYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTD 296 >RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 313 Score = 293 bits (749), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 152/285 (53%), Positives = 194/285 (68%), Gaps = 3/285 (1%) Query: 13 AAVG--ASQAQAQELTGTLKNIKDTGAITLGYRDSSIPFSYLDDNQKPVGYAMEICYKIV 70 AA+G +S A AQELTGTLK IKDTG ITLG RDSSIPFSY + +GY+ ++ K+V Sbjct: 26 AAIGVLSSAAHAQELTGTLKKIKDTGTITLGVRDSSIPFSYNVGGVRTIGYSYDVATKVV 85 Query: 71 DAVKKELKLDKLEVKLNPVTSATRIPLMANGTVDLECGSTTNNAERQKQVSFTNSHFLTA 130 +AVK++LKL L+VK PVTS RI L+ NGT+DLECGSTTNN ERQKQ SFTN+ F+ Sbjct: 86 EAVKEQLKLKDLQVKEIPVTSQNRITLLQNGTIDLECGSTTNNLERQKQASFTNTIFIIG 145 Query: 131 SRYVTKKASKINSIDDLKGKTVVSTAGTTNIKQLTEANLARGLSVNIIPAKDHAEAFLMV 190 +R + KK S I DLKGK VV+TAGTT+ + L + N + L +NII KDH ++FL + Sbjct: 146 TRMMVKKDSGIKDWVDLKGKNVVTTAGTTSERLLRKMNDEKQLGMNIISTKDHGQSFLTL 205 Query: 191 ETDRAVAFVMDDILLASLVAGSKSPDDYVISKDAFSKPEPYGIMLRKDDAPFKKVVDAAT 250 E+ RAVAF+MDD LL A +K+P D+V+ S+ E YG M+RKDDAPFK + D Sbjct: 206 ESGRAVAFMMDDALLYGERAKAKTPADWVVVGKPQSR-EAYGCMVRKDDAPFKTLADKTI 264 Query: 251 AALYTSAEGQKIYDKWFTQKIPPKGLNLNVPLGPEMKKQLAKPSD 295 A + Y KWF Q +PPKGLNL+ PL +MK + P+D Sbjct: 265 AGMMKDGSINAEYKKWFEQPVPPKGLNLDFPLSDDMKALIKSPND 309 >PA5082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 299 Score = 289 bits (739), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 149/290 (51%), Positives = 194/290 (66%), Gaps = 4/290 (1%) Query: 9 LALAAAVGASQAQAQELTGTLKNIKDTGAITLGYRDSSIPFSYLDDNQ-KPVGYAMEICY 67 L+L+ A+GA AQA+EL+GTLK + D G ITLGYRD+S+PFSYL DN +P+GY++E+ Sbjct: 11 LSLSLAIGA--AQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPMGYSVELAG 68 Query: 68 KIVDAVKKELKLDKLEVKLNPVTSATRIPLMANGTVDLECGSTTNNAERQKQVSFTNSHF 127 K+V+ +K L +L+VK N VTS TRIPL+ NGTVDLECGST AERQKQV+F+ Sbjct: 69 KVVERLKSTLGKPELKVKYNLVTSQTRIPLVQNGTVDLECGSTGVTAERQKQVAFSYGFI 128 Query: 128 LTASRYVTKKASKINSIDDLKGKTVVSTAGTTNIKQLTEANLARGLSVNIIPAKDHAEAF 187 + +T+K S I DDLKGK VV+TAGTTN + L N L +N++ AKDH EAF Sbjct: 129 YVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAF 188 Query: 188 LMVETDRAVAFVMDDILLASLVAGSKSPDDYVISKDAFSKPEPYGIMLRKDDAPFKKVVD 247 M+++ RAVAF MDD LL A ++ P D+V+ + S+ E Y M+RKDD F +V+ Sbjct: 189 QMLQSGRAVAFYMDDALLYGERAKARQPHDWVVVGEPQSR-EIYSCMVRKDDPQFLALVN 247 Query: 248 AATAALYTSAEGQKIYDKWFTQKIPPKGLNLNVPLGPEMKKQLAKPSDSP 297 A LY S E Q IY +WF Q IPPKGLNL P+ E+K L P+ P Sbjct: 248 ETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTSDP 297 >ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain EcZ Escherichia coli O157:H7 EDL933 Length = 302 Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 135/271 (49%), Positives = 177/271 (65%), Gaps = 7/271 (2%) Query: 28 TLKNIKDTGAITLGYRDSSIPFSYLDDNQKPVGYAMEICYKIVDAVKKELKLDKLEVKLN 87 TL I G I +G+R+SS+PFSY D+ QK VGY+ + IV+AVKK+L L+VKL Sbjct: 32 TLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLI 91 Query: 88 PVTSATRIPLMANGTVDLECGSTTNNAERQKQVSFTNSHFLTASRYVTKKASKINSIDDL 147 P+TS RIPL+ NGT D ECGSTTNN ERQKQ +F+++ F+ +R +TKK I DL Sbjct: 92 PITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADL 151 Query: 148 KGKTVVSTAGTTNIKQLTEANLARGLSVNIIPAKDHAEAFLMVETDRAVAFVMDDILLAS 207 KGK VV T+GTT+ L + N + +++ II AKDH ++F +E+ RAVAF+MDD LLA Sbjct: 152 KGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAG 211 Query: 208 LVAGSKSPDDYVISKDAFSKP---EPYGIMLRKDDAPFKKVVDAATAALYTSAEGQKIYD 264 A +K PD++ D KP E YG MLRKDD FKK++D A + TS E +K +D Sbjct: 212 ERAKAKKPDNW----DIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFD 267 Query: 265 KWFTQKIPPKGLNLNVPLGPEMKKQLAKPSD 295 KWF IPPK LN+N L EMK +P+D Sbjct: 268 KWFKNPIPPKNLNMNFELSDEMKALFKEPND 298 >ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ecs Escherichia coli O157:H7 Length = 302 Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 135/271 (49%), Positives = 177/271 (65%), Gaps = 7/271 (2%) Query: 28 TLKNIKDTGAITLGYRDSSIPFSYLDDNQKPVGYAMEICYKIVDAVKKELKLDKLEVKLN 87 TL I G I +G+R+SS+PFSY D+ QK VGY+ + IV+AVKK+L L+VKL Sbjct: 32 TLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLI 91 Query: 88 PVTSATRIPLMANGTVDLECGSTTNNAERQKQVSFTNSHFLTASRYVTKKASKINSIDDL 147 P+TS RIPL+ NGT D ECGSTTNN ERQKQ +F+++ F+ +R +TKK I DL Sbjct: 92 PITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADL 151 Query: 148 KGKTVVSTAGTTNIKQLTEANLARGLSVNIIPAKDHAEAFLMVETDRAVAFVMDDILLAS 207 KGK VV T+GTT+ L + N + +++ II AKDH ++F +E+ RAVAF+MDD LLA Sbjct: 152 KGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAG 211 Query: 208 LVAGSKSPDDYVISKDAFSKP---EPYGIMLRKDDAPFKKVVDAATAALYTSAEGQKIYD 264 A +K PD++ D KP E YG MLRKDD FKK++D A + TS E +K +D Sbjct: 212 ERAKAKKPDNW----DIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFD 267 Query: 265 KWFTQKIPPKGLNLNVPLGPEMKKQLAKPSD 295 KWF IPPK LN+N L EMK +P+D Sbjct: 268 KWFKNPIPPKNLNMNFELSDEMKALFKEPND 298