BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0011.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1773 [R] COG0824 Predicted thioesterase Rso Ralstonia solanac...   119   2e-27
PA5329 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...   114   8e-26
PA5185 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...    75   5e-14
RSp0038 [R] COG0824 Predicted thioesterase Rso Ralstonia solanac...    68   5e-12
RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanac...    68   6e-12

>RSc1773 [R] COG0824 Predicted thioesterase Rso Ralstonia solanacearum
          Length = 149

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 5/141 (3%)

Query: 3   EEFWFHFPFRVRYSEVDAQAVVFNAHYLTYFDTAITEYFRALGYDYLGEVART-GIDFHT 61
           E+F    P RVR++EVDAQ +VFN HYL Y D  ITEY+RA+G  Y  EV    G+DF+ 
Sbjct: 4   EDFRHGTPLRVRWAEVDAQGIVFNGHYLLYADVCITEYWRAIGVRYPTEVVEAFGVDFYV 63

Query: 62  VKSVVEYKAPIRFDEDIEVCVRVARIGRSSINLALAIFAKGSDDLRA---TGEIIWVATD 118
           VKS +EY A  RFD+ +++  RVAR+GRSS+   + I+ +G  D RA   TGE+I+V  D
Sbjct: 64  VKSTLEYHASARFDDVLDLRCRVARLGRSSLRFIIEIY-RGEGDDRAHLVTGEVIYVCAD 122

Query: 119 QKTHQSVAVTEDLRALIASRE 139
             T  SV V   LR  I   E
Sbjct: 123 PATQTSVPVPARLRERIVDFE 143


>PA5329 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 154

 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 2   REEFWFHFPFRVRYSEVDAQAVVFNAHYLTYFDTAITEYFRALGYDYLGEVARTGIDFHT 61
           R+ + F    RVR++EVD Q +VFN +YLTY D A TEY+R LG  Y  ++ R G D   
Sbjct: 7   RQNYTFFHSLRVRWAEVDPQGIVFNGNYLTYLDVATTEYYRQLGMSYPADLLRGGGDLFA 66

Query: 62  VKSVVEYKAPIRFDEDIEVCVRVARIGRSSINLALAIFAKGSDDLRATGEIIWVATDQKT 121
           VKS +EY+AP  FD+ +++  RVAR+GRSS+   L I+    + L   GE+++V  D   
Sbjct: 67  VKSTLEYRAPAHFDDWLDIGTRVARLGRSSLVFELGIWR--DEQLLTVGELVYVYADANE 124

Query: 122 HQSVAVTEDLRALIASREK 140
            QS  + + LR  I + E+
Sbjct: 125 RQSQPLPDWLREKIRAFER 143


>PA5185 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 147

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 17/148 (11%)

Query: 1   MREEFWFHFPFRVRYSEVDAQAVVFNAHYLTYFDTAITEYFRALGYDYLGEVARTGIDFH 60
           +RE++    P   R+ + D    V N  Y  +FDTA+  Y           + R G+D  
Sbjct: 8   LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYL----------IERGGLDIQ 57

Query: 61  -------TVKSVVEYKAPIRFDEDIEVCVRVARIGRSSINLALAIFAKGSDDLRATGEII 113
                   V S  +Y AP+ F + IE+ +RVAR+G SS+   LA+F +G  +  A G  +
Sbjct: 58  GGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFV 117

Query: 114 WVATDQKTHQSVAVTEDLRALIASREKA 141
            V  ++++ + VA+ ++LR  +A+ + +
Sbjct: 118 HVFVERRSSRPVAIPQELRDALAALQSS 145


>RSp0038 [R] COG0824 Predicted thioesterase Rso Ralstonia solanacearum
          Length = 136

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 3/127 (2%)

Query: 12  RVRYSEVDAQAVVFNAHYLTYFDTAITEYFR-ALGYDYLGEVARTGIDFHTVKSVVEYKA 70
           R+R+   D   +V+   YL  F+  + ++F   LG  Y   +    I    VK   E+ A
Sbjct: 10  RIRFGHCDPAGIVYFPQYLVLFNGLVEDWFTDGLGISYADMLGPRRIGLPIVKLHCEFSA 69

Query: 71  PIRFDEDIEVCVRVARIGRSSINLALAIFAKGSDDLRATGEIIWVATDQKTHQSVAVTED 130
             R  +D+++ +R+ R+G +S++LAL  +A   D  R   + + V TD  TH+++AV  D
Sbjct: 70  ISRMGDDVQLKLRLERLGNASLSLALDCWA--GDQQRVRSQQVLVFTDLNTHRAIAVPPD 127

Query: 131 LRALIAS 137
           +R  +A+
Sbjct: 128 VRQALAA 134


>RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanacearum
          Length = 134

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 7   FHFPFRVRYSEVDAQAVVFNAHYLTYFDTAITEYFRALGYDYLGEVARTGIDFHTVKSVV 66
           F +  RV + + DA  VVF A+YL +F+ A TE+ RALG D       TG  F    + V
Sbjct: 4   FDWNLRVYWEDTDAGGVVFYANYLKFFERARTEWLRALGVDQQALADTTGAIFVVRSTAV 63

Query: 67  EYKAPIRFDEDIEVCVRVARIGRSSINLALAIFAKGSDDLRATGEIIWVATDQKTHQSVA 126
           +Y+AP R D+ ++V  R+ R+G +S+  A   +    D L  +G I     D+ T +   
Sbjct: 64  DYRAPARLDDLLQVRSRMERVGPASVQFAQESWR--GDILLVSGTIRVGCVDRLTFRPTP 121

Query: 127 VTEDLRALI 135
           +   + A I
Sbjct: 122 IPAPILATI 130