BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0004.p (539 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6288 [E] COG0747 ABC-type dipeptide transport system, peripla... 308 2e-83 SMc03269 [E] COG0747 ABC-type dipeptide transport system, peripl... 305 2e-82 AGl3099 [E] COG0747 ABC-type dipeptide transport system, peripla... 173 1e-42 BMEII0210 [E] COG0747 ABC-type dipeptide transport system, perip... 148 4e-35 SMc02025 [E] COG0747 ABC-type dipeptide transport system, peripl... 128 3e-29 >mlr6288 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Mlo Mesorhizobium loti Length = 531 Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/515 (36%), Positives = 268/515 (52%), Gaps = 19/515 (3%) Query: 30 FAPQAMAAGKTITAVMHSDLRVIDPIMTTAYITRDHGYMIYDTLLATDSNFKIQPQMAD- 88 F AMA T+ + +DL+ +DPI+TT+ T H Y+IYD L D + +P++AD Sbjct: 26 FTSTAMA--DTLRVIADTDLKTVDPIVTTSGTTLVHAYLIYDKLFEFDKDGIARPELADK 83 Query: 89 WKVSDDKLTYTFTLRDGLKWHDGAPVTAEDCVASLQRWGKVDGMGQKLMDFVASLEATDA 148 +S DK +YT TLR GLK+ DG +T +D + SL+RW D GQ L + + D Sbjct: 84 VDISADKKSYTITLRKGLKFSDGGAITTDDVLQSLKRWASRDQTGQLLAARLKEMTKVDD 143 Query: 149 KTITLKLKEPYGLVLESIGKPSSRVPFMMPKRLAETPPDKPIPEQIGSGPFKFVQAEFQP 208 T ++L +P+ V ++ + F+MPKR+A PP + + GSGP++F ++P Sbjct: 144 LTFRVELSQPFD-VPAALAGITGNPAFIMPKRVASLPPTDQLTDTTGSGPYQFDYTSWKP 202 Query: 209 GVKAVYEKNKDYVPRKEPASWTAGGKVVKVDRVEWVTMADAQTAVNALQSGDIDFMENLP 268 G +Y KN +YVPR +P S+ AG K D++E + DA TA+ + +G D P Sbjct: 203 GQTRIYIKNPNYVPRNDPPSFFAGKKEATFDKIEMSYVPDANTAMAQMLTGQQDIWPGPP 262 Query: 269 FDMLPVLEANPDLKIDVLNKFGFQTLGRMNFLYPPFDNPKVRRAAFLAMNQKDVLDALVG 328 D L+ANPDL V F Q L +N + PFDN K R A ++Q ++ A VG Sbjct: 263 MDNALALKANPDLV--VAKGFFTQGLYVINHVVRPFDNVKAREALTYLIDQAEINRAAVG 320 Query: 329 NAKYQRICGAFFVCGTPLETDVGAETLVKGNGLA----EAKKALAASGYDGTPVVIMIPG 384 + ++ C A+ C E G E+ G+ A +AKK L +GYDG P+V++ P Sbjct: 321 DQEFWHTCYAYLTC----EGTYGDESAYTGHRGAADFDKAKKLLEEAGYDGKPIVVLDPT 376 Query: 385 DVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVSRRASQKPPKEGGWNMFFTNWVAADV 444 D AQ LR AG VD Q DW T+ SRR S+ P EGGWN+F Sbjct: 377 DWSEAHARALYMAQQLRKAGAQVDLQAMDWSTLTSRRTSKAPASEGGWNLFPNIMEGQPA 436 Query: 445 SDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFARAGSAEEKKKIAAEIQTEAYDQVIY 504 S P+ + + + WFGW D IE+LR F AG EKKKIA+EIQ A + + Sbjct: 437 SSPLTHLMLAANC-DKAWFGWPCDKGIEDLRAAFISAGDLSEKKKIASEIQARASTYLPF 495 Query: 505 VPLGQYTIPSAWRKSLTGVLDGPATP--IFWNIDK 537 + G+ T +R + G P TP FWNI + Sbjct: 496 IMTGENTAAVVYRADIEGF--NPETPEVYFWNIRR 528 >SMc03269 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 532 Score = 305 bits (780), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 180/508 (35%), Positives = 270/508 (53%), Gaps = 15/508 (2%) Query: 36 AAGKTITAVMHSDLRVIDPIMTTAYITRDHGYMIYDTLLATDSNFKIQPQMAD-WKVSDD 94 AA VM +L++IDPI+TT+ T H YMIYD L D + PQ+A+ +S D Sbjct: 31 AANADTLRVMGGNLKIIDPIVTTSGDTLIHAYMIYDKLFEFDESGVPLPQLAEKVDISAD 90 Query: 95 KLTYTFTLRDGLKWHDGAPVTAEDCVASLQRWGKVDGMGQKLMDFVASLEATDAKTITLK 154 ++T LRDGLK+ DG P+T++D + SL RW D GQ L L D T+ + Sbjct: 91 NKSFTIKLRDGLKFSDGTPITSDDVIQSLTRWASRDQTGQLLRARTKDLVKIDDNTLRID 150 Query: 155 LKEPYGLVLESIGKPSSRVPFMMPKRLAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVY 214 L E + V ++ + F+MPKR+A PP + + + +GSGP++F + ++PG VY Sbjct: 151 LTESFD-VPSALAGITGNPAFIMPKRVASLPPTEALTDTVGSGPYQFDFSTWKPGQMRVY 209 Query: 215 EKNKDYVPRKEPASWTAGGKVVKVDRVEWVTMADAQTAVNALQSGDIDFMENLPFDMLPV 274 KN Y+PR E AS+ AG K +DR+E+ + D TA+ ++ +G D + P Sbjct: 210 TKNSYYIPRDEAASFYAGRKEAVMDRIEFSYVPDPNTAMASMLTGKQDIWLDPPMANAVA 269 Query: 275 LEANPDLKIDVLNKFGFQTLGRMNFLYPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQR 334 L NP+LK V+ + Q L +N + PPFDN K ++A ++QK++ VG+ ++ Sbjct: 270 LRNNPNLK--VVKGYSLQGLFVINHVVPPFDNVKAKQALTYLIDQKEINAIAVGDPEFWH 327 Query: 335 ICGAFFVC-GTPLETDVGAETLVKGN----GLAEAKKALAASGYDGTPVVIMIPGDVQTL 389 C AF C GT G E++ G+ + +AK+ +GYDG PVVI+ P D Sbjct: 328 ACYAFLTCSGT-----YGNESVYDGHRGPANVEKAKELFNEAGYDGQPVVILDPTDWPEA 382 Query: 390 KGPPTVAAQLLRAAGFNVDAQVTDWQTVVSRRASQKPPKEGGWNMFFTNWVAADVSDPIV 449 AQ LR G VD Q DW T+ SRR S++P +GGWN+F S P+ Sbjct: 383 HARALYLAQQLREIGVKVDLQAMDWGTLTSRRTSKEPADKGGWNLFPNVMEGQPASSPLT 442 Query: 450 NASITGRGKNGGWFGWAEDAKIEELRDKFARAGSAEEKKKIAAEIQTEAYDQVIYVPLGQ 509 + + + WFGW D +IE+LR F R +EKKKIA E+Q A + +V G+ Sbjct: 443 HLMLASSCEK-AWFGWPCDKQIEDLRASFIRTVDIDEKKKIADELQARASAYLPFVMTGE 501 Query: 510 YTIPSAWRKSLTGVLDGPATPIFWNIDK 537 Y + ++ ++ G + P FWN+ + Sbjct: 502 YNVVMSYGLNIEGFIPSAPEPFFWNVRR 529 >AGl3099 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 517 Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/503 (26%), Positives = 238/503 (47%), Gaps = 23/503 (4%) Query: 34 AMAAGKTITAVMHSDLRVIDPIMTTAYITRDHGYMIYDTLLATDSNFKIQPQMADW--KV 91 A G I + +DP+ +TA + I++TL D +K+ P +A+ ++ Sbjct: 31 AAEKGGVINVATIGEPPTLDPMASTADLVGIVTQHIFETLYTFDKGWKVTPLLAESLPEI 90 Query: 92 SDDKLTYTFTLRDGLKWHDGAPVTAEDCVASLQRWGKVDGMGQKLMDFVASLEATDAKTI 151 S D TYT LR G+K+HDG+ +T+ED VASL RW K+ G++ F+ ++ A DA T+ Sbjct: 91 SADGKTYTIKLRQGIKFHDGSDMTSEDVVASLGRWMKIASRGKQAAGFIDNISAPDAGTV 150 Query: 152 TLKLKEPYGLVLESIGKPSSRVPFMMPKRLAETPPDKPIPEQIGSGPFKFVQAEFQPGVK 211 T+ LK+PY + + +S + ++ AE P+ E +G+GP+ + + ++ Sbjct: 151 TITLKQPYAPLTSLLAFNNSAAIILPAEKQAE-----PMAEFVGTGPYMLKERKADQYIQ 205 Query: 212 AVYEKNKDYVPRKEPASWTAGGKVVKVDRVEWVTMADAQTAVNALQSGDIDFMENLPFDM 271 V + Y R + G + +D + +V + D T V A SG D+++++P + Sbjct: 206 LV--RFDGYKSRDGESDGYGGARHQYLDEIRFVPVPDPNTRVEAAVSGQYDYVDSIPVES 263 Query: 272 LPVLEANPDLKIDVLNKFGFQTLGRMNFLYPPFDNPKVRRAAFLAMNQKDVLDALVGNAK 331 ++++ + +L FGF N +VR+A A+N +D+L A G+ Sbjct: 264 FEKVKSSSASQPMMLKPFGFPVF-VFNTKEGLASKLEVRKAVTEALNMEDMLAAAFGSTD 322 Query: 332 YQRICGAFFVCGTPLETDVGAETLVKGNGLAEAKKALAASGYDGTPVVIMIPGDVQTLKG 391 + + GA++ T+ G + A + L A+GY+G P+ I+ + Sbjct: 323 FYALDGAYYPDNFSWHTEEGVDGNYNVGNPEAAAEKLKAAGYNGEPLRILTSRQYEFHYK 382 Query: 392 PPTVAAQLLRAAGFNVDAQVTDWQTVVSRRASQKPPKEGGWNMFFTNWVAADVSDPIVNA 451 VAA+ L+ AGF VD QV DW T+ RRA K W+++ ++ + + +P + Sbjct: 383 MAQVAAEYLKLAGFKVDMQVVDWATLTQRRADPKL-----WDIYISH--SPFLPEPALMG 435 Query: 452 SITGRGKNGGWFGWAEDAKIEELRDKFARAGSAEEKKKIAAEIQTEAYDQVIYVPLGQYT 511 +++ GW + + D F E++ + A +Q Y ++ + +G + Sbjct: 436 ALSTSSP-----GWWDTPARKAAVDAFTSEADPEKRLALWANVQKTIYAELPLIKIGDFN 490 Query: 512 IPSAWRKSLTGVLDGPATPIFWN 534 +A L GV P P FWN Sbjct: 491 AAAAKSNKLEGVDPAP-WPYFWN 512 >BMEII0210 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Bme Brucella melitensis Length = 503 Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 134/506 (26%), Positives = 229/506 (45%), Gaps = 33/506 (6%) Query: 38 GKTITAVMHSDLRVIDPIMTTAYITRDHGYMIYDTLLATDSNFKIQPQMAD-WKVSDDKL 96 G T+ ++ +DP M + + + + IY+ L+ D+N+ +A+ + +S+D Sbjct: 18 GGTLVYASNAGPGTLDPHMGNSLVELEIAHQIYEGLVTIDANYNTATMLAESYVLSEDGK 77 Query: 97 TYTFTLRDGLKWHDGAPVTAEDCVASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLK 156 T TF LR G+K+HDG+ + ++D +AS +R+ KV K++D V E D T + LK Sbjct: 78 TLTFKLRKGVKFHDGSDMKSDDVLASFERYAKVSP-NAKVLDIVDHYETPDDYTFVIHLK 136 Query: 157 EPYGLVLESIGKPSSRVPFMMPKRLAETPPDKPIPEQ--IGSGPFKFVQAEFQPGVKAVY 214 E L+++ P PF + + DKP E IG+GPFK E++ Sbjct: 137 EVNAAFLDTLKSPV--YPFSI---IPAEQKDKPARELDIIGTGPFKL--GEWKRDSHLYL 189 Query: 215 EKNKDYVPRK-EPASWTAGGKVVKVDRVEWVTMADAQTAVNALQSGDIDFMENLPFDMLP 273 EK DYV K +PAS AG K V VD+V +++ + V A+Q+G+ L D Sbjct: 190 EKFADYVADKGKPASGYAGEKKVYVDKVRVNFLSETNSRVAAIQTGEAQVTTQLTADATK 249 Query: 274 VLEANPDLKIDVLNKFGFQTLGRMNFLYPPFDNPKVRRAAFLAMNQKDVL----DALVGN 329 L+ P +K + F Q L +N P +N +R+A A+N +D+L +A + Sbjct: 250 KLQNAPGVKPLEIIPFCQQYL-IVNTQQAPTNNSAIRKALRTAVNAEDILVVSGEAATMD 308 Query: 330 AKYQRICGAFFVCGTPLETDVGAETLVKGNGLAEAKKALAASGYDGTPVVIMIPGDVQTL 389 GA++ + AE N EA K LA +GY G +V++ + + Sbjct: 309 PSMSYPGGAYY-------SKENAEPYYNQNNPDEAAKMLADAGYKGEELVLLTNSNYDYM 361 Query: 390 KGPPTVAAQLLRAAGFNVDAQVTDWQTVVSRRASQKPPKEGGWNMFFTNWVAADVSDPIV 449 + + A+ L+AAGF ++TDW T ++ G WN+ T++ + + P Sbjct: 362 RDNIVLLAEQLQAAGFKARVEMTDWAT----NSTAMQTGSGKWNVSTTSFCSNPLLGPQQ 417 Query: 450 NASITGRGKNGGWFGWAEDAKIEELRDKFARAGSAEEKKKIAAEIQTEAYDQVIYVPLGQ 509 S+ + DA ++ KF + E+++ +I+ D+ + + Sbjct: 418 WQSVVYL-----FPQVKSDALMDTAYKKFFTSLKLEDRRAAWLDIEKHILDEAYMIKISN 472 Query: 510 YTIPSAWRKSLTGVLDGPATPIFWNI 535 A+R G FWN+ Sbjct: 473 RASGRAYRPDDIGGYPEYYMNFFWNV 498 >SMc02025 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 514 Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 217/474 (45%), Gaps = 48/474 (10%) Query: 36 AAGKTITAVMHSDLRVIDPIMTTAYITRDHGYMIYDTLLATDSNFKIQPQMA-DWKVSDD 94 AA + IT SDLR +P + T I + L+ ++ +++P +A +++S D Sbjct: 18 AAARDITIAQSSDLRSNNPGVNRDGNTDSIILHIVEGLVGYNNVGEVKPLLAKSFEMSAD 77 Query: 95 KLTYTFTLRDGLKWHDGAPVTAEDCVASLQRWGKVDGMGQKLMDF-------VASLEATD 147 LTYTF LR +K+H+G P+TA+D V + R+ K + L DF VA ++ATD Sbjct: 78 GLTYTFKLRTDVKFHNGKPMTADDVVWNWTRYLKPETKWTCLKDFAEGGAAPVAGVKATD 137 Query: 148 AKTITLKLKEPYGLVLESIGKPSSRVPFMM-PKRLAETPPDKPIPEQIGSGPFKFVQAEF 206 A T+ + L +P + L + +P M+ P +A D + IG+GPF + E+ Sbjct: 138 AATVEITLAKPSAVFLGLMSRPECGFTGMISPDSVA---ADGSFAQPIGTGPFMW--GEW 192 Query: 207 QPGVKAVYEKNKDYV-PRKE-PASWTAGGKVVKVDRVEWVTMADAQTAVNALQSGDIDFM 264 + G EK DYV P E G K D V+++ + DA T L+SG +D Sbjct: 193 KKGEYIHLEKFADYVSPENEGKPDGMVGSKRPLADGVKFMVIPDASTVKAGLESGVLDTA 252 Query: 265 ENLPFDMLPVLEANPDLKIDVL-----NKFGFQTLGRMNFLYPPFDNPKVRRAAFLAMNQ 319 E P D++P +A+ +++ V N F QT ++ NP VRRA +A++ Sbjct: 253 EISP-DLIPEFQASDTMQLIVARNNGKNLFYIQTRDKV------LSNPGVRRAMAMALD- 304 Query: 320 KDVLDALVGNAKYQRICGAFFVCGTPLETD--VGAETLVKG--NGLAEAKKALAASGYDG 375 LD LV A G G+ + D +ET K + AKK LA +GY+G Sbjct: 305 ---LDQLVAAAS----NGTGEANGSMVSQDSVYFSETQKKRLPYDIEAAKKELADAGYNG 357 Query: 376 TPVVIMIPGDVQTLKGPPTVAAQ-LLRAAGFNVDAQVTDWQTVVSRRASQKPPKEGGWNM 434 P+ I+ P V AQ +++ AG NV +V D+ T V RR S G Sbjct: 358 EPISIIANKRGNVPSFPAAVMAQAMMQQAGLNVQIEVLDYATQVDRRRS-------GNYQ 410 Query: 435 FFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFARAGSAEEKK 488 + VA + ++ + G W + IE + +A A + +K Sbjct: 411 VISQSVAPRLDPALMYSFYVGDKDENASLMWDDPKAIELMNAAYAEADQVKRQK 464