BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0007.p (396 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 577 e-164 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 558 e-158 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 556 e-158 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 440 e-123 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 122 2e-27 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust. Identities = 274/373 (73%), Positives = 315/373 (84%), Gaps = 1/373 (0%) Query: 25 VKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLGQKIEIVTADHQNKPDLATAIAR 84 VKIGILNDQSGVYAD+GGK+S EAA+MA EDFGG VLG IEI+TADHQNKPD+A+ IAR Sbjct: 28 VKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPDVASNIAR 87 Query: 85 RWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAATSRITGDACTPYSFHWAYDT 144 +WY+ E VD I ELTTSSV LAVQ LSKEKKKI I GAATS +TG CTPY FHWAYDT Sbjct: 88 QWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGFHWAYDT 147 Query: 145 RALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVVSKKGKVVGSVRVPLNSSDF 204 ALAVGTGG+L + GGDTW+FLTADYAFGY+LE+ T+ V SK GKV+GSVR PL+++D+ Sbjct: 148 HALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRHPLSTTDY 207 Query: 205 SSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQKLAGLLMTLSEVHGLGLEA 264 SSFLLQAQAS AK++GLANAGLDT+N+IKQAAEFGIV GGQ+LA LL TL+EVHGLGLEA Sbjct: 208 SSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEVHGLGLEA 267 Query: 265 AQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHAGTYSATLSYLKAVKAAGTKDSE 324 AQGL LTEGFYWD DD SRAF +RFF RT RMP+MI AGTYSA L YLKA+K AGT ++E Sbjct: 268 AQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKEAGTDETE 327 Query: 325 AVAAKLKELPVDDAFAK-GKVLANGRMVHDLYLFEVKKPSESKKPWDYYKQIAVVPGDQA 383 AVA KL E+PV+D FA+ GKV NGRM++D+YL EVKKP ESK PWDYYK +A +PGDQA Sbjct: 328 AVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLATIPGDQA 387 Query: 384 FFTAKESGCPLTK 396 + +ESGCPL K Sbjct: 388 YMKPEESGCPLVK 400 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust. Identities = 262/373 (70%), Positives = 313/373 (83%), Gaps = 1/373 (0%) Query: 25 VKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLGQKIEIVTADHQNKPDLATAIAR 84 VKIGILNDQSGVYA++GGKYS EAA+MAVEDFGG+VLG +E+VTADHQNK D+A+ IAR Sbjct: 29 VKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVASNIAR 88 Query: 85 RWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAATSRITGDACTPYSFHWAYDT 144 +WY+ E VD I ELT+SSV LAVQ LSK+KKKI + GAAT+ +TG C+PY FHWAYDT Sbjct: 89 QWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWAYDT 148 Query: 145 RALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVVSKKGKVVGSVRVPLNSSDF 204 +LAVGTGGAL + GGD+WFFLTADYAFGY+LE++TS+ V + GKV+GSVR PL ++D+ Sbjct: 149 YSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPLATTDY 208 Query: 205 SSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQKLAGLLMTLSEVHGLGLEA 264 SSFLLQAQ+S AK+IGLANAGLDT+N+IKQA+EFGIV GGQ+LA LL TL+EVHGLGLEA Sbjct: 209 SSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVHGLGLEA 268 Query: 265 AQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHAGTYSATLSYLKAVKAAGTKDSE 324 AQGL LTEGFYWD DD SR F ERF +RT MP+MIH GTYSA L YLKA++ AGT D++ Sbjct: 269 AQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKAGTDDAD 328 Query: 325 AVAAKLKELPVDDAFAK-GKVLANGRMVHDLYLFEVKKPSESKKPWDYYKQIAVVPGDQA 383 AVA +KE+PV+D FAK G V ANGRM+HD+YL EVKKP ESK+PWDYYK +A +PG +A Sbjct: 329 AVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLATIPGKEA 388 Query: 384 FFTAKESGCPLTK 396 F +SGCPL K Sbjct: 389 FMDPTKSGCPLVK 401 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/392 (68%), Positives = 318/392 (81%), Gaps = 1/392 (0%) Query: 6 LAAVAACSLMLAAPAMAQGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLGQKI 65 LA V A S A A VKIGILNDQSGVYAD+GGK S EAA MAVEDFGG+VLG + Sbjct: 9 LAMVLAGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVLGVPV 68 Query: 66 EIVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAAT 125 E+VTADHQNKPD+A+ IAR+WY+ E VD I ELTTSSVALAVQ +SKEKKKIDIV GAAT Sbjct: 69 EVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTGAAT 128 Query: 126 SRITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVV 185 + +TG C+PY FHWAYDT +LAVGTGGAL + GGD+WFFLTADYAFGY+LE++T + V Sbjct: 129 TELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGNYVK 188 Query: 186 SKKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQ 245 G VVG+VR PL ++DFSSFLLQAQ+S AK+IGLANAGLDT+N+IKQAAEFGIV+GGQ Sbjct: 189 ENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQ 248 Query: 246 KLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHAGTY 305 +LA LL TL+EVHGLGL+AAQGL LTEGFYW+ D+ S F +RF +RT +MP+M+HAGTY Sbjct: 249 RLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMVHAGTY 308 Query: 306 SATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAK-GKVLANGRMVHDLYLFEVKKPSE 364 SA L YLKA++ AGT ++EAVA +L LPVDD FAK G V NGRM+HD+YL EVKKP E Sbjct: 309 SAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEVKKPDE 368 Query: 365 SKKPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 SK+PWDY+K +A +PG +AF +SGC L K Sbjct: 369 SKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/394 (55%), Positives = 294/394 (74%), Gaps = 6/394 (1%) Query: 8 AVAACSLMLAAP-AMAQ----GVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLG 62 A+ A L LAA A AQ VKIG + D SG+YAD G+ +EA +MA+ED GG+VLG Sbjct: 9 ALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKVLG 68 Query: 63 QKIEIVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVG 122 + IE+VTADHQNK D+A + AR W + + +DM+ T S+ +LA+ +++ EKK++ I +G Sbjct: 69 KPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIG 128 Query: 123 AATSRITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSD 182 A T+R+T + CTPY+ H+AYDT ALA GTG A+ + GG +WFFLTADYAFG++LE DT+ Sbjct: 129 AGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAA 188 Query: 183 IVVSKKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVR 242 +V + G VVGSV+ PL++SDFSS+LLQAQASKA+I+GLANAG DT NSIK A EFGI + Sbjct: 189 VVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFGITK 248 Query: 243 GGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHA 302 K+AGLLM +++VH LGL+ A+GL++T+ +YWD +DA+R F+ R+F + +MPS + A Sbjct: 249 -TMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSSLQA 307 Query: 303 GTYSATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAKGKVLANGRMVHDLYLFEVKKP 362 YSA +Y+KAV AAGT D + V A+LK+ ++D F+KG + A+GR VHD+YL +VK P Sbjct: 308 ADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFFSKGTIRADGRYVHDMYLMQVKTP 367 Query: 363 SESKKPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 +ESKKPWDY K +A +PGDQAF T ES CPL K Sbjct: 368 AESKKPWDYMKIVATIPGDQAFTTPAESKCPLLK 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 25 VKIGILNDQSGVYADYGGKYSLEAARMAVEDFG--GEVLGQKIEIVTADHQNKPDLATAI 82 ++IG+++ +GVYA + + AR+AV G +LG+ IE++ D N Sbjct: 40 LRIGMVDPMTGVYAAVA-QNEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQK 98 Query: 83 ARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAATSRITGDACTPYSFHWAY 142 AR+ E + V + S +A A+ ++S EKK + IV G T ITG C + Sbjct: 99 ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158 Query: 143 DTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVVSKKGKVVGSVRVPLNSS 202 T A L G W F+T DYAFG+ L+K + + G + G+ PL ++ Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTT 218 Query: 203 DFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQ-KLAGLLMTLSEVHGLG 261 DFS++L++A+A+ ++ + G D N +KQ A+FGI G Q +AGL L + + Sbjct: 219 DFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI--GKQMHIAGLQQELESLEAMP 276 Query: 262 LEAAQGLVLTEGFYW 276 EA G+ + E +YW Sbjct: 277 PEARVGIWMFE-WYW 290