BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0020.p (404 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 479 e-135 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 471 e-132 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 468 e-131 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 428 e-119 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 130 4e-30 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust. Identities = 218/379 (57%), Positives = 286/379 (75%) Query: 24 QISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGKVKGKPVQVIAADHQNKPDV 83 +ISD VKIG+L D S +YA+ GK S A +MAV D+GGKV G PV+V+ ADHQNK DV Sbjct: 23 EISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADV 82 Query: 84 GVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTACSPNTV 143 NIAR WYD ++VD+I+++ +SSV L + AL+++K +I +N+G ++++TG CSP Sbjct: 83 ASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGF 142 Query: 144 HWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLGDVRHP 203 HW YDTY+L+ G A+VK+G D+WFF+TADYAFG +LE + +N VK +GGKVLG VRHP Sbjct: 143 HWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHP 202 Query: 204 LNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIALLQEITDTH 263 L ++D+SSFLLQAQ+S AKV+ LANAG DT+NA+KQASEFG+ GGQ++ ALL + + H Sbjct: 203 LATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVH 262 Query: 264 SLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKAIEAI 323 LG++A QGL +T+ FYWD +DE+R F +RF E+ G MP MI G YSA +HYLKAIE Sbjct: 263 GLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKA 322 Query: 324 GTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFEVKKPEESKGEWDLYKLIAT 383 GTD+A V M+ PVND FAK+GH+ +GRM+HD+YL EVKKP+ESK WD YK++AT Sbjct: 323 GTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLAT 382 Query: 384 VPGDEAFRPLDKGGCPLVK 402 +PG EAF K GCPLVK Sbjct: 383 IPGKEAFMDPTKSGCPLVK 401 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 213/380 (56%), Positives = 284/380 (74%) Query: 23 AQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGKVKGKPVQVIAADHQNKPD 82 A+ISD VKIG+L D S +YAD GK S A +MA D+GG V G P+++I ADHQNKPD Sbjct: 21 AEISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPD 80 Query: 83 VGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTACSPNT 142 V NIAR WYD ++VD+I+++ TSSV L + AL++EK +I IN+G +S++TG C+P Sbjct: 81 VASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYG 140 Query: 143 VHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLGDVRH 202 HW YDT+AL+ G ++V++G DTW+F+TADYAFG +LE V+ GGKVLG VRH Sbjct: 141 FHWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRH 200 Query: 203 PLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIALLQEITDT 262 PL+++D+SSFLLQAQAS AKVV LANAG DT+NA+KQA+EFG+ GGQ++ ALL + + Sbjct: 201 PLSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEV 260 Query: 263 HSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKAIEA 322 H LG++A QGL +T+ FYWD +DE+RAF KRF ++ G MP MIQAG YSA + YLKAI+ Sbjct: 261 HGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKE 320 Query: 323 IGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFEVKKPEESKGEWDLYKLIA 382 GTDE V ++ PV D FA++G + +GRM++D+YL EVKKPEESK WD YK++A Sbjct: 321 AGTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLA 380 Query: 383 TVPGDEAFRPLDKGGCPLVK 402 T+PGD+A+ ++ GCPLVK Sbjct: 381 TIPGDQAYMKPEESGCPLVK 400 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/402 (55%), Positives = 293/402 (72%), Gaps = 3/402 (0%) Query: 2 KTLLAAAAAGLALTVSATAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADY 61 K L+A A LA +TAA A SD VKIG+L D S +YAD GK S A MAV D+ Sbjct: 3 KKLIATLAMVLA---GSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDF 59 Query: 62 GGKVKGKPVQVIAADHQNKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNR 121 GGKV G PV+V+ ADHQNKPD+ NIAR WYD ++VD+I+++ TSSVAL + A+++EK + Sbjct: 60 GGKVLGVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKK 119 Query: 122 IHINSGGGSSDITGTACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMAL 181 I I +G ++++TG CSP HW YDT++L+ G A+VK+G D+WFF+TADYAFG +L Sbjct: 120 IDIVTGAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSL 179 Query: 182 ERDAANVVKESGGKVLGDVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQAS 241 E + N VKE+GG V+G VRHPL ++DFSSFLLQAQ+S AKV+ LANAG DT+NA+KQA+ Sbjct: 180 EENTGNYVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAA 239 Query: 242 EFGLTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHM 301 EFG+ QGGQ++ ALL + + H LG+ A QGL +T+ FYW+ ++E+ F KRF E+ G M Sbjct: 240 EFGIVQGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKM 299 Query: 302 PTMIQAGLYSATMHYLKAIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLY 361 P M+ AG YSA + YLKAIE GTDE V ++ A PV+D FAKNG + +GRM+HD+Y Sbjct: 300 PNMVHAGTYSAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMY 359 Query: 362 LFEVKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLVKS 403 L EVKKP+ESK WD +K++AT+PG EAF + GC LVKS Sbjct: 360 LLEVKKPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVKS 401 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/398 (51%), Positives = 284/398 (71%), Gaps = 2/398 (0%) Query: 5 LAAAAAGLALTVSATAANAQISDDVVKIGVLTDMSSLYADATGKGSVAAVEMAVADYGGK 64 LA A L ++A+ A+AQ+S D VKIG +TD+S LYAD G+G V AV+MA+ D GGK Sbjct: 6 LAGALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGK 65 Query: 65 VKGKPVQVIAADHQNKPDVGVNIARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHI 124 V GKP++++ ADHQNK D+ + AR W D +D ++ S+ +L +S + EK R+ I Sbjct: 66 VLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFI 125 Query: 125 NSGGGSSDITGTACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERD 184 G G++ +T C+P T+H+ YDT AL+ G A+VK+G +WFF+TADYAFG +LE D Sbjct: 126 GIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLEND 185 Query: 185 AANVVKESGGKVLGDVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFG 244 A VVK +GG V+G V+HPL++SDFSS+LLQAQASKA+++ LANAGGDT N++K A EFG Sbjct: 186 TAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFG 245 Query: 245 LTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTM 304 +T+ K+ LL I D HSLG++ +GL++TD++YWDMND TR F+ R+ K+ MP+ Sbjct: 246 ITK-TMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSS 304 Query: 305 IQAGLYSATMHYLKAIEAIGTDEAPKVMAQMRATPVNDFFAKNGHIRIDGRMVHDLYLFE 364 +QA YSA +Y+KA+ A GTD+ KV+AQ++ T +NDFF+K G IR DGR VHD+YL + Sbjct: 305 LQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFFSK-GTIRADGRYVHDMYLMQ 363 Query: 365 VKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLVK 402 VK P ESK WD K++AT+PGD+AF + CPL+K Sbjct: 364 VKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLK 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 137/255 (53%), Gaps = 7/255 (2%) Query: 30 VKIGVLTDMSSLYADATGKGSVAAVEMAVADYG--GKVKGKPVQVIAADHQNKPDVGVNI 87 ++IG++ M+ +YA A + V +AVA G + G+P++++ D N GV Sbjct: 40 LRIGMVDPMTGVYA-AVAQNEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQK 98 Query: 88 ARNWYDNDKVDAILDVPTSSVALPISALTREKNRIHINSGGGSSDITGTACSPNTVHWTY 147 AR + D+V ++ S +A I+ ++ EK +HI SGG + ITG+ C N Sbjct: 99 ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158 Query: 148 DTYALSNVAGKAMVKRGEDTWFFVTADYAFGMALERDAANVVKESGGKVLGDVRHPLNSS 207 T +N + + W F+T DYAFG L++ AA +++ GG + G+ PL ++ Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPLGTT 218 Query: 208 DFSSFLLQAQASKAKVVALANAGGDTTNALKQASEFGLTQGGQKMIA-LLQEITDTHSLG 266 DFS++L++A+A+ V+ + G D N LKQ ++FG+ G Q IA L QE+ ++ Sbjct: 219 DFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI--GKQMHIAGLQQELESLEAMP 276 Query: 267 IKATQGLIVTDAFYW 281 +A G+ + + +YW Sbjct: 277 PEARVGIWMFE-WYW 290