BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0010.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1727 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 127 3e-29 YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 107 4e-23 BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-ty... 106 7e-23 YPO2583 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 105 9e-23 AGl3486 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 97 5e-20 >mll1727 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 328 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 134/231 (58%), Gaps = 6/231 (2%) Query: 27 SQEQIVLLITIALLIVFGLTLNGFATVSNLLNLLRSISILGVLGLGMGLIVISRGIDLSE 86 +QE IV I + L + + L GF +NL+ ++RS+S+LG+L LGM +++I RGIDLS Sbjct: 13 NQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMAVVIIGRGIDLSA 72 Query: 87 VAIMAGSWAIALIYMQNGMPVFTAVLLALAIAVLIGVVNGVMVAFVEAPALFVTLAAGFV 146 VAIMA S A L + G A L+ ++IG++NG +VA+ + PA+FVTLA G Sbjct: 73 VAIMAMSVAWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADVPAIFVTLATGSF 132 Query: 147 IYGLAFWIAPAWVVYAPKDAPG---LMYLGAGRLFGIPVPILVFAACAIAMHLFLSRTSI 203 ++G ++ + P + LG R IP+ + VFA A LFL T Sbjct: 133 VFG---YVRSQLITQDAVPVPQGHWVELLGGLRFLDIPIEVFVFAGLAFLFFLFLRYTKW 189 Query: 204 GRFIYSQGDNPEAARLTGVALRPLIVLEHVLVAVLAWIAGLVWVGTTGSMQ 254 GR+IY GDNP AAR G+ +RP++VL +VL A +A IAGL+ + S+ Sbjct: 190 GRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN 240 >YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 330 Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 2/198 (1%) Query: 48 NGFATVSNLLNLLRSISILGVLGLGMGLIVISRGIDLSEVAIMAGSWAIALIYMQNGMPV 107 + F TV+NL N+ R +SI ++ +GM +++ GIDLS +MA S +IA M G+P+ Sbjct: 50 DSFLTVNNLTNVARQVSINAIIAVGMTCAILTGGIDLSVGPVMALSGSIAAGLMLAGIPI 109 Query: 108 FTAVLLALAIAVLIGVVNGVMVAFVEAPALFVTLAAGFVIYGLAFWIAPAWVVYAPKDAP 167 A++ AL + L G+ NG +A++ P + VTLA+ + GLA + + D Sbjct: 110 PLAMMAALLVGALFGLANGSCIAYLRMPPIIVTLASMGIARGLALLYTGGYPISGLPDM- 168 Query: 168 GLMYLGAGRLFGIPVPILVFAACAIAMHLFLSRTSIGRFIYSQGDNPEAARLTGVALRPL 227 + G G + GI VPIL+ A + + L+ S GR+IY+ G N EAARL+G+ + Sbjct: 169 -FSFFGRGTVLGIQVPILIMAGVYLFAWIMLNHLSFGRYIYAIGGNEEAARLSGIRVSRY 227 Query: 228 IVLEHVLVAVLAWIAGLV 245 +L +V+ + A +AGLV Sbjct: 228 KMLVYVVSGLTAALAGLV 245 >BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 346 Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 26/265 (9%) Query: 1 MSVQSPSRGVAVPAASSRLGAMFAKPSQEQIVL-----LITIALLIVFGLTLNGFATVSN 55 MSV S ++ A P + R K S ++L IA++ VF + TV N Sbjct: 1 MSVTSTNKETAAPTGAKR------KTSLVHLLLEGRAFFALIAIIAVFSFLSPYYFTVDN 54 Query: 56 LLNLLRSISILGVLGLGMGLIVISRGIDLSEVAIMAGSWAIALIYMQN----------GM 105 L + ++I G+L +GM L++++ GIDLS + + + +A MQ Sbjct: 55 FLIMSSHVAIFGLLAIGMLLVILNGGIDLSVGSTLGLAGVVAGFLMQGVTLQEFGIILYF 114 Query: 106 PVFTAVLLALAIAVLIGVVNGVMVAFVEAPALFVTLAAGFVIYGLAFWIAPAWVVYAPKD 165 PV+ VL+ A+ +G VNGV++A++ PA TL + G+A + Sbjct: 115 PVWAVVLITCALGAFVGAVNGVLIAYLRVPAFVATLGVLYCARGVALLMTNGLTYNNLGG 174 Query: 166 AP-----GLMYLGAGRLFGIPVPILVFAACAIAMHLFLSRTSIGRFIYSQGDNPEAARLT 220 P G +LG +LFG+P+ +LV A AI + L+RT+ GR++Y+ G N AA L+ Sbjct: 175 RPELGNTGFDWLGFNKLFGVPIGVLVLAILAIICAIVLNRTAFGRWLYASGGNERAAELS 234 Query: 221 GVALRPLIVLEHVLVAVLAWIAGLV 245 GV ++ + V +V+ + A IAGLV Sbjct: 235 GVPVKRVKVSVYVISGICAAIAGLV 259 >YPO2583 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 342 Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 125/238 (52%), Gaps = 20/238 (8%) Query: 32 VLLITIALLIVFGLTLNGFATVSNLLNLLRSISILGVLGLGMGLIVISRGIDLSEVAIMA 91 VL+ LLI F L + F + N+ N+L +SI G++ +GM ++++ GIDLS +I+A Sbjct: 29 VLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILA 88 Query: 92 GSWAIALIYMQN------------GMPVFTAVLLALAIAVLIGVVNGVMVAFVEAPALFV 139 S A ++ GM + + LA+ LIG + G+ V + P V Sbjct: 89 VSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIV 148 Query: 140 TLAAGFVIYGLAFWI---APAWVVYAPKDAPGLMYLGAGRLFGIPVPILVFAACAIAMHL 196 TL + GL I AP A DA G + G G L GI +PI +FA AIA +L Sbjct: 149 TLGGMTIWRGLTLVINDGAPI----AGFDA-GYRWWGRGDLLGISIPIWIFAIVAIAGYL 203 Query: 197 FLSRTSIGRFIYSQGDNPEAARLTGVALRPLIVLEHVLVAVLAWIAGLVWVGTTGSMQ 254 L +T GRF+Y+ G NPEAARL GV ++ ++V +V++ LA +AG + GS + Sbjct: 204 ALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAE 261 >AGl3486 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 334 Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 1/239 (0%) Query: 14 AASSRLGAMFAKPSQEQIVLLITIALLIVFGLTLNGFATVSNLLNLLRSISILGVLGLGM 73 A S L FA+ +Q + ++ F +T + F T NLLN++R + + ++ + M Sbjct: 8 AKGSPLSDFFAENAQVLSIAAFFALCMVFFSVTTDTFLTAGNLLNVVRQAAPILIVSVAM 67 Query: 74 GLIVISRGIDLSEVAIMAGSWAIALIYMQNGMPVFTAVLLALAIAVLIGVVNGVMVAFVE 133 ++I+ GIDLS +++A A+ I + G P V+ L + +G+V G +A+ Sbjct: 68 TFVIITGGIDLSVGSMVALINAVGAILLAAGYPWPLVVVAMLVLGGGLGLVQGWFIAYQG 127 Query: 134 APALFVTLAAGFVIYGLAFWIAPAWVVYAPKDAPGLMYLGAGRLFGIPVPILVFAACAIA 193 PA VTLA ++ G+A +I + V P DAPG YLG G G+PVP L+ + Sbjct: 128 IPAFIVTLAGLSILRGVALYITQGYSVPIP-DAPGFFYLGRGDFLGMPVPALIGVVVTVI 186 Query: 194 MHLFLSRTSIGRFIYSQGDNPEAARLTGVALRPLIVLEHVLVAVLAWIAGLVWVGTTGS 252 ++ LS T GR + + G NPEAAR G+ + ++ ++ V + IAGL+ GS Sbjct: 187 AYIVLSSTRYGRRVVAVGSNPEAARRVGMPAKWILASVYLAAGVASAIAGLMIAARLGS 245