BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0009.p (331 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2018 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 271 2e-72 PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 211 2e-54 PA1399 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 186 9e-47 RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 164 2e-40 PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 159 9e-39 >RSc2018 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 321 Score = 271 bits (692), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/297 (49%), Positives = 191/297 (64%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 +H+ VDLNLFVVFDAIYSEGG++ A LNLTQPAVSHAL RLR +FDDPLF RR M Sbjct: 7 VHISRVDLNLFVVFDAIYSEGGITAAARTLNLTQPAVSHALGRLRELFDDPLFERRGQGM 66 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTPLAR ++ VR AL G E TL RFDPA + +RF + +R+ LEA +L L+ I+ Sbjct: 67 VPTPLARTLVAEVRAALQGFERTLREGTRFDPAASERRFTLSMRDALEATLLPPLMAAIA 126 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 AP +++ TVR +R LE EL AGT+D A+D LLP+S +R +L++ + V AR GHP Sbjct: 127 REAPRIDVTTVRGDRRQLEAELLAGTIDAAVDILLPVSPAIRHAPLLSDPMVVLARPGHP 186 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 L + YL EHV V+SRR G ED +L+RLG R VRL CQ++ AC VVS ++ Sbjct: 187 VTQGPLTLERYLAYEHVHVSSRRRGAGLEDVELRRLGRERRVRLRCQHYPAACRVVSCTD 246 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAA 297 +L+T A + P P PF + P YLYWHA ++ D +WLR+ + AA Sbjct: 247 LLVTLPVRYARIANAPYGNVMLPLPFKVPPLELYLYWHANSDQDAAGRWLRDHVLAA 303 >PA2551 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 310 Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/296 (39%), Positives = 172/296 (58%), Gaps = 6/296 (2%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M++ VDLNLF+VFDAIY+E ++RA + +TQPAVS+ALSRLR F+DPLFVR M Sbjct: 1 MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTP+A+ II VR AL L ++ + FDP Q K + I + + EA +L L R+ Sbjct: 61 VPTPMAQNIIGPVRNALQLLRVSVQESRSFDPQQANKTYRISMTDLTEAVILPPLFQRLR 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 +AP V I + ++R +ELAAG LD A+D L +VR +++ + RRGHP Sbjct: 121 RLAPNVHIESFLAKRRETTKELAAGRLDFAVDAPLNTDPQVRHVKLMEDRYVCAMRRGHP 180 Query: 181 ELGS-RLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRS 239 G +L YL + H+ ++SRRSGL + D L ++G+ R + L Q++ A VV ++ Sbjct: 181 LAGKPKLALDDYLGLTHIHISSRRSGLGYIDLALGKMGIQRKIALRSQHYLMASTVVQQT 240 Query: 240 NMLLTASESAASVLEDPGLLQCFPCPFPISPHVN-YLYWHATAEDDTTNQWLREQL 294 +M +T E A + L P P + +LYWH + + D N+W+REQ+ Sbjct: 241 DMAMTVPERFARHHD----LHYAVLPVSDVPKLETHLYWHESTDQDPANRWMREQI 292 >PA1399 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 306 Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 156/288 (54%), Gaps = 3/288 (1%) Query: 7 DLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVMTPTPLA 66 DLNLF VF+ +Y E ++RA L+L+Q AVSHAL+RLR DPLFVR+ + PTPLA Sbjct: 14 DLNLFRVFEVVYRERNLTRAAGLLHLSQSAVSHALARLRDQLGDPLFVRQGRGVAPTPLA 73 Query: 67 RQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRISTVAPLV 126 ++ + AL GL ++ FDP + + F + + LE +L A++ + AP + Sbjct: 74 ERLAPGIHDALAGLHRSMNRCQTFDPRRDARTFQLNMPEQLEPLVLPAILAHLRQAAPRI 133 Query: 127 EIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHPELGSRL 186 EI +L+ EL AG +D+AI+ P A +RR+ +L + + V A P L Sbjct: 134 EIRCNSLHWADLKAELGAGRIDLAIEIARPTDAALRRQHLLDDSLCVMA---GPGFAGDL 190 Query: 187 DKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSNMLLTAS 246 + YL +HV VTSRR G+ ED L LGL R VR CQ++ +A +V++ LLT + Sbjct: 191 SAEEYLAADHVAVTSRRRGICIEDLALGHLGLARQVRQRCQHYLSAALLVAQGGYLLTLT 250 Query: 247 ESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQL 294 A ++ + P P + LYW A+D+ + WLR +L Sbjct: 251 RGYAELINRGLGNRLLPMPLALPAVTLNLYWSHQADDEAGSLWLRGEL 298 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 151/294 (51%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M ++D+DLNL VVF+ + + VS L +TQPA+S+AL+RLR + D LFVR + M Sbjct: 1 MELQDIDLNLLVVFNELLRQRRVSAVAETLGITQPAISNALNRLRKLLGDELFVRTSKGM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTP A + + AL + +L T RF+PA + + F I + + E L L+ R++ Sbjct: 61 IPTPFAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLA 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 AP V ++TVR+ + L E+ AG +D+AI L L + + ++ + R+GHP Sbjct: 121 RDAPGVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDLKSGFFQRRLFRQRYVCLFRKGHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 + + +L EHV + + +G D + R GL R V L +F H++ ++ Sbjct: 181 LAKRGMTMEGFLEAEHVSIVAEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTD 240 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQL 294 ++ ++ A+ P L CP I + WHA + NQWLR+ L Sbjct: 241 LIAVVPQAYATRTLKPFGLDTAACPVKIPDITINVLWHARNHREPGNQWLRQLL 294 >PA5189 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 148/299 (49%), Gaps = 1/299 (0%) Query: 1 MHVRDVDLNLFVVFDAIYSEGGVSRACFRLNLTQPAVSHALSRLRAMFDDPLFVRRNHVM 60 M+++ DLNL V DA+ E VSRA RL L+QPAVS+AL+RLR + DDPL VR M Sbjct: 1 MNIQTFDLNLLRVLDALLRERNVSRAAERLALSQPAVSNALNRLRELLDDPLLVRAGRAM 60 Query: 61 TPTPLARQIITTVRQALNGLETTLTHTHRFDPAQTPKRFVIGLRNNLEAPMLSALVNRIS 120 PTP A + +R AL +E +L FDP ++ +RF + + + +E + AL+ R+S Sbjct: 61 QPTPRALALEAPIRAALRQIEQSLGDGEGFDPGRSRQRFTVAVTDYVELICMPALMRRLS 120 Query: 121 TVAPLVEIATVRSERNNLERELAAGTLDVAIDTLLPLSAEVRREQILTEHIAVFARRGHP 180 AP + IA L G LD+ + + A +R +E + + ARR HP Sbjct: 121 ERAPGISIAIQHLTPTLPAEALDKGELDLVLGRFENVPARFQRRHWASETLQLVARRQHP 180 Query: 181 ELGSRLDKKAYLRMEHVCVTSRRSGLSFEDFQLQRLGLTRTVRLTCQNFATACHVVSRSN 240 L D +L ++H+ V ++ D L GL R V T N+ A H+ + S+ Sbjct: 181 LLAQAPDLATFLELQHLWVHGGQTK-GMVDQWLGSQGLKRQVAYTTPNYLQAAHIAAYSD 239 Query: 241 MLLTASESAASVLEDPGLLQCFPCPFPISPHVNYLYWHATAEDDTTNQWLREQLRAAAA 299 ++ A E LQ F PF + P L + A E D QWL EQ+R A Sbjct: 240 LVGVLPRQLAHYFERLLPLQSFDLPFDLGPFHLELVFLAQRERDIALQWLVEQIRQVGA 298