BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0029.p (275 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1005 [S] COG4886 Leucine-rich repeat (LRR) protein Ype Yersin... 208 1e-53 YPO1007 [S] COG4886 Leucine-rich repeat (LRR) protein Ype Yersin... 199 8e-51 STM0800_2 [S] COG4886 Leucine-rich repeat (LRR) protein Sty Salm... 168 1e-41 STM2241_2 [S] COG4886 Leucine-rich repeat (LRR) protein Sty Salm... 149 5e-36 >YPO1005 [S] COG4886 Leucine-rich repeat (LRR) protein Ype Yersinia pestis Length = 626 Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/268 (44%), Positives = 166/268 (61%), Gaps = 7/268 (2%) Query: 11 WQNFADEAGAPAYALFLDKLQKTVNYDN-PEFRQAVAEDLRQAATRPPLRQQFFQLAFGA 69 W N EA + A+++FL +L T N +N PEF+Q +A L Q A P LR+Q F +A A Sbjct: 344 WANIETEANSAAFSVFLHRLATTQNANNIPEFKQQIAAWLLQLADSPTLREQTFLIAQEA 403 Query: 70 SETCQDRITLTWNGMQTARLKADVEDGAYDDRLGELIQQARVLFRLNALDPIARQKVNSL 129 S TC+DRITLT N MQ A + +VE G YD++L EL+ + R +FRL L+ IAR+KV L Sbjct: 404 SATCEDRITLTHNDMQKAVMLHEVEKGKYDEKLPELMARGREMFRLEQLENIAREKVKIL 463 Query: 130 RF-----VDEIEVYLAYQVKLRDRLDLQLIAPDMRFYEVSYVTEHDLTAAETQVRNQEEA 184 + VD+IEVYLAYQVKL + L L + +MRF+ VS+VT DL +AET+V+ E Sbjct: 464 KTLNVNSVDDIEVYLAYQVKLLNSLQLSSVNKEMRFFGVSHVTADDLLSAETRVKTAENQ 523 Query: 185 GFADYLATHWQPWGTVVSRIAPEAHAQMQVRLREAMDEEFPSRLEQRLADHHLTGDSEAE 244 F+ +L + W PW +VV RI PE +A + A++ +P +L LA + +TGD +A Sbjct: 524 DFSRWL-SQWSPWKSVVQRIEPERYAAAVEKQYHALENIYPDKLAAELAANGMTGDVDAN 582 Query: 245 VQFGAQIREEIAREIKGALMRQVLGDRG 272 G +I +E+ EI AL +VL +G Sbjct: 583 RIVGKRINDELMGEIDMALTHEVLSAKG 610 >YPO1007 [S] COG4886 Leucine-rich repeat (LRR) protein Ype Yersinia pestis Length = 605 Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 117/268 (43%), Positives = 160/268 (59%), Gaps = 7/268 (2%) Query: 11 WQNFADEAGAPAYALFLDKLQKTVNYDN-PEFRQAVAEDLRQAATRPPLRQQFFQLAFGA 69 W E + + +FL +L T N N PEF+Q +A L Q A LR+Q F +A A Sbjct: 323 WAKIEKETNSGDFNVFLCRLATTQNVKNIPEFKQQIAAWLLQLAGSFTLREQTFLIAQEA 382 Query: 70 SETCQDRITLTWNGMQTARLKADVEDGAYDDRLGELIQQARVLFRLNALDPIARQKVNSL 129 S TC+DRITLT N MQ A + +VE G YD++L ELI + R +FRL L+ IAR+KV +L Sbjct: 383 SATCEDRITLTHNDMQKAVMLHEVEKGKYDEKLPELIARGREMFRLEQLENIAREKVKTL 442 Query: 130 RF-----VDEIEVYLAYQVKLRDRLDLQLIAPDMRFYEVSYVTEHDLTAAETQVRNQEEA 184 + VD+IEVYLAYQVKLR L+L + +MRF+ VS VT DL +AET+V+ E Sbjct: 443 KTLNVHSVDDIEVYLAYQVKLRGSLELSSVNKEMRFFGVSDVTTDDLLSAETRVKTAENQ 502 Query: 185 GFADYLATHWQPWGTVVSRIAPEAHAQMQVRLREAMDEEFPSRLEQRLADHHLTGDSEAE 244 F +L+ W PW +VV RI PE +A + A++ +P +L LA + +TGD +A Sbjct: 503 DFPRWLS-QWSPWKSVVQRIEPERYAAAVEKQYHALENIYPDKLAAELAANGMTGDVDAN 561 Query: 245 VQFGAQIREEIAREIKGALMRQVLGDRG 272 G +I +EI EI AL +VL +G Sbjct: 562 RIVGKRINDEIMEEIDMALTHEVLSAKG 589 >STM0800_2 [S] COG4886 Leucine-rich repeat (LRR) protein Sty Salmonella typhimurium LT2 Length = 620 Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 158/276 (57%), Gaps = 12/276 (4%) Query: 4 EPEAIAAWQNFADEAGAPAYALFLDKLQKTVNYDNPEFRQAVAEDLRQAATRPPLRQQFF 63 E E + W+ F EA A A++ FLD L T N +P+F++ V+ L + A LR+ F Sbjct: 332 EEEDVNQWRAFEAEANAAAFSGFLDYLGDTQNTRHPDFKEQVSAWLMRLAEDSALRETVF 391 Query: 64 QLAFGASETCQDRITLTWNGMQTARLKADVEDGAYDDRLGELIQQARVLFRLNALDPIAR 123 +A A+ +C+DR+TL ++ MQ A L D E GA+D L ELI R +FRL ++ +AR Sbjct: 392 IIAMNATISCEDRVTLAYHQMQEATLVHDAERGAFDSHLAELIMAGREIFRLEQIESLAR 451 Query: 124 QKVNSLRFVDEIEVYLAYQVKLRDRLDLQLIAPDMRFYEVSYVTEHDLTAAETQVRNQEE 183 +KV L F+DE+EV+L +Q +LR+ L L + DMRFY VS +TE DL AE +++ E Sbjct: 452 EKVKRLFFIDEVEVFLGFQNQLRESLSLTTMTRDMRFYNVSGITESDLDEAEIRIKMAEN 511 Query: 184 AGFADYLATHWQPWGTVVSRIAPEAHAQMQVRLREAMD-EEFPSRLEQRLADHHLTGDSE 242 F + A W PW V+ RIAPE +M + E ++ +E+ SR+ L D + DS+ Sbjct: 512 RDFHKWFAL-WGPWHKVLERIAPEEWREMMAKRDECIETDEYQSRVNAELEDLRIADDSD 570 Query: 243 A----EVQ------FGAQIREEIAREIKGALMRQVL 268 A EVQ G +I EEI + + +M +L Sbjct: 571 AERTTEVQMDAERAIGIKIMEEINQTLFTEIMENIL 606 >STM2241_2 [S] COG4886 Leucine-rich repeat (LRR) protein Sty Salmonella typhimurium LT2 Length = 629 Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 140/253 (55%), Gaps = 2/253 (0%) Query: 2 KGEPEAIAAWQNFADEAGAPAYALFLDKLQKTVNY-DNPEFRQAVAEDLRQAATRPPLRQ 60 +GEP W F E A A++LFLD+L +T N+ + F+ ++ L Q A LR Sbjct: 349 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRA 408 Query: 61 QFFQLAFGASETCQDRITLTWNGMQTARLKADVEDGAYDDRLGELIQQARVLFRLNALDP 120 F +A A+ +C+DR+T + M+ +L + E G YD+ L L+ R +FRL L+ Sbjct: 409 NTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATGREMFRLGKLEQ 468 Query: 121 IARQKVNSLRFVDEIEVYLAYQVKLRDRLDLQLIAPDMRFYEVSYVTEHDLTAAETQVRN 180 IAR+KV +L VDEIEV+LAYQ KL+ L L + +MRF++VS VT DL AE QV+ Sbjct: 469 IAREKVRTLALVDEIEVWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAELQVKA 528 Query: 181 QEEAGFADYLATHWQPWGTVVSRIAPEAHAQMQVRLREAMDEEFPSRLEQRLADHHLTGD 240 E++ F +++ W P V+ R APE ++ + +E + + L L G+ Sbjct: 529 AEKSEFREWI-LQWGPLHRVLERKAPERVNALREKQISDYEETYRMLSDTELRPSGLVGN 587 Query: 241 SEAEVQFGAQIRE 253 ++AE GA+ E Sbjct: 588 TDAERTIGARAME 600