BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0001.p         (474 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0902 [N] COG1749 Flagellar hook protein FlgE Ccr Caulobacter v...    95   4e-19
HP0870 [N] COG1749 Flagellar hook protein FlgE Hpy Helicobacter ...    91   5e-18
jhp0804 [N] COG1749 Flagellar hook protein FlgE jHp Helicobacter...    91   5e-18
RSp0345 [N] COG1749 Flagellar hook protein FlgE Rso Ralstonia so...    91   7e-18
BB0283 Non COG                                                         84   6e-16

>CC0902 [N] COG1749 Flagellar hook protein FlgE Ccr Caulobacter vibrioides
          Length = 591

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 8/144 (5%)

Query: 336 SGGVTQFADANGNVQVNQIQQDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATF 395
           +GG+TQ+   N    V  +  +G   G L ++ +   G +   + NG    +A++++ATF
Sbjct: 451 AGGLTQY---NSQSVVQSVNTNGTAFGNLTNIEIDEGGYVSAIFDNGVTRRIAQVAIATF 507

Query: 396 NGTNFLKRIDGGAFEATDESG-----AALFGKAGTIVGSSLESSNTDIADEFTKLIVTQQ 450
           +  N LK ++G A+  T+ESG     A   G AG +  S+LE+S  D++ EFT LI TQ+
Sbjct: 508 SNPNGLKGVNGNAYRVTNESGTYSLKAPSQGGAGALAPSTLEASTVDLSQEFTGLITTQR 567

Query: 451 AYSANTKVITTTNSMVQDLLNVVR 474
           AYSA++K+ITT + M+++LLN+ R
Sbjct: 568 AYSASSKIITTADQMLEELLNIKR 591


>HP0870 [N] COG1749 Flagellar hook protein FlgE Hpy Helicobacter pylori
           26695
          Length = 718

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 354 IQQDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATD 413
           I+Q+G+ AG L  V   ++G ++G ++NGR + LA++++A F     L+ + G  F  T 
Sbjct: 593 IEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTG 652

Query: 414 ESGAALF-----GKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQD 468
            SG AL      G+ G+I GS LESSN D++   T LIV Q+ + AN+K +TT++ ++  
Sbjct: 653 NSGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNT 712

Query: 469 LLNV 472
           LLN+
Sbjct: 713 LLNL 716


>jhp0804 [N] COG1749 Flagellar hook protein FlgE jHp Helicobacter pylori J99
          Length = 718

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 354 IQQDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGTNFLKRIDGGAFEATD 413
           I+Q+G+ AG L  V   ++G ++G ++NGR + LA++++A F     L+ + G  F  T 
Sbjct: 593 IEQNGYQAGDLMDVRFDSDGVLLGAFSNGRTLALAQVALANFANDAGLQALGGNVFSQTG 652

Query: 414 ESGAALF-----GKAGTIVGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTTNSMVQD 468
            SG AL      G+ G+I GS LESSN D++   T LIV Q+ + AN+K +TT++ ++  
Sbjct: 653 NSGQALIGAANTGRRGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNT 712

Query: 469 LLNV 472
           LLN+
Sbjct: 713 LLNL 716


>RSp0345 [N] COG1749 Flagellar hook protein FlgE Rso Ralstonia solanacearum
          Length = 401

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 124/260 (47%), Gaps = 33/260 (12%)

Query: 219 GTVGTGQVIGNDNSTFLNESVSGGAVTAYDVSGAPVNLQFRWAKTDSSSLGSGHTDTWNL 278
           GTV T       NS   N SVS      YD +G    L   + +T +          W++
Sbjct: 168 GTVPTTTPFSATNSATFNHSVS---EQVYDGTGTSHMLTNYYVRTAAG---------WDV 215

Query: 279 FYQVN-PNATGTQVSWQNVNVNFTFASNGQMSPAISSVALTNAVVNGVSLGSPVINFGSG 337
           + QV+  N TG      N   + TF S+G ++ + S VA+  A       G  + N    
Sbjct: 216 YSQVDGANPTG-----GNPVTSLTFNSSGVLTSSPSKVAVAFA-------GMSIANMDFT 263

Query: 338 GVTQFADANGNVQVNQIQQDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNG 397
           G TQ+    G      + QDG+  G+L S SV T+G I G Y+NGR   L +I++  F  
Sbjct: 264 GTTQYG---GGFNDTTVSQDGYATGRLASYSVGTDGTITGRYSNGRTSTLGQIAMTNFKA 320

Query: 398 TNFLKRIDGGAFEATDESGAALFGKAGT-----IVGSSLESSNTDIADEFTKLIVTQQAY 452
            + L+ I G  +  T ESGA   G  G      +  S++E SN D++ E   +IV Q++Y
Sbjct: 321 PDGLQNIGGNQWVETAESGAPQMGTPGMGSFGLLQSSAVEQSNVDLSAELVNMIVAQRSY 380

Query: 453 SANTKVITTTNSMVQDLLNV 472
            AN + I T ++++Q L+++
Sbjct: 381 QANAQTIKTEDTILQTLVSM 400


>BB0283 Non COG
          Length = 442

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 8/139 (5%)

Query: 339 VTQFADANGNVQVNQIQQDGFPAGQLQSVSVSTNGRIVGNYTNGRNIDLAEISVATFNGT 398
           +TQFAD++       I QDG+  G +++  +  NG IVG Y+NG   DL +I++A+F   
Sbjct: 305 ITQFADSS---STKAIIQDGYGMGYMENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNP 361

Query: 399 NFLKRIDGGAFEATDESGAALFGKAGT-----IVGSSLESSNTDIADEFTKLIVTQQAYS 453
             L +     F  T  SG    G+ G      I    LE +N D+A++FT +IVTQ+ + 
Sbjct: 362 GGLAKSGDTNFVETSNSGQVRIGETGLAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQ 421

Query: 454 ANTKVITTTNSMVQDLLNV 472
           AN K ITT++ ++Q+L+ +
Sbjct: 422 ANAKTITTSDQLLQELVRL 440