BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0124.p         (365 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MK0601 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...    61   4e-09

>MK0601 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Mka Methanopyrus
           kandleri AV19
          Length = 319

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 4/216 (1%)

Query: 82  APLPVAIDHGFFQKQNLDVELVNYSGSTDQLLEAIATGKSDAGLGMALRWLKPLEQGFDV 141
           A L VA+    F+K+ + VE   +     +  +A+A GK D      +  +    +G  +
Sbjct: 42  AALFVAMAKKMFEKEGIKVETYEFKAGPPET-QALAAGKIDVAYIGCVPAITAYSKGVPI 100

Query: 142 KIAAGTHGGCMRVLTRTNSG--VDKLADLKGKIVAVGDLAGPDKNFFSIQLAKLGIDPIK 199
           KI AG +     ++ R +    +  + DLKGK VA               L + G+DP K
Sbjct: 101 KIVAGVNQEGSAIVVRKDEAGKIKDIKDLKGKRVAELMKGSIQDCMLRTALKRAGLDPDK 160

Query: 200 DVDWRAYPGNLLNVAVEKGEVQAFLSSDPLAYLWLKDAQYKEVASNLDGEYRDKSCCIVG 259
           DVD           A+   ++ AF+  +P   + +K   +     +    +    CC++ 
Sbjct: 161 DVDIVEMKTADAVNALGAKQIDAFIEPEPGPTMAVKKG-FGVRLMDTGKIWSHHQCCVLV 219

Query: 260 LRGSLVREEPQVARAITQALLDAAMFTSQNPDKAAK 295
           +R   +   P +A+ + +  + A  +  ++PD+AAK
Sbjct: 220 MRKDFIERHPNLAKKVLKVHVMATKYVQEHPDEAAK 255