BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0058.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0396 Non COG                                                        141   5e-34
RSc1295 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    57   1e-08

>CC0396 Non COG
          Length = 147

 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 95/136 (69%), Gaps = 1/136 (0%)

Query: 6   RLIFLLTVAYRRLQRAIDQETAAHD-LTSAQAGVLFSLGRNDGALIGDVSQALDIVPSAM 64
           RL+FLL   +RR+QR I+   AA   LT+AQ+GVLF LG  DGALIG+ + ALD+ PSAM
Sbjct: 8   RLVFLLNAGHRRVQRWIEGRMAAEGGLTAAQSGVLFFLGERDGALIGEAADALDLAPSAM 67

Query: 65  SGLADRMERAGLVKRRRDGEDGRSQRLYLTAAGQELGKRAATRTRVINNRLMDGFSDAEI 124
           +GL DRM RA LV+RR D +DGR+  L+LT  G+     A    R +N +L +GF+D EI
Sbjct: 68  TGLIDRMARAELVERRADAKDGRAMHLHLTDKGRAARDTAKAGLRGVNAQLTEGFTDEEI 127

Query: 125 DVVARWLTSLQDKFPK 140
            VV+RWL SLQ KFPK
Sbjct: 128 SVVSRWLASLQTKFPK 143


>RSc1295 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 147

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 9   FLLTVAYRRLQRAIDQETAAHDLTSAQAGVLFSLGRNDGALIGDVSQALDIVPSAMSGLA 68
           +LL  A   L  AI+QE    D+T +QA  L  L         D+ + L+    +++ + 
Sbjct: 7   YLLGRAKTALSMAIEQEVTLMDVTHSQASCLMLLANGRCQTATDLGRELNTDIGSLTRML 66

Query: 69  DRMERAGLVKRRRDGEDGRSQRLYLTAAGQELGKR-AATRTRVINNRLMDGFSDAEIDVV 127
            RME+ GL++R R   D R   L LT AG+ L +R  A  T+V+ NR   GF+ AE+  +
Sbjct: 67  SRMEKRGLIERMRSESDRRVVHLALTDAGRTLAERMPAIYTQVL-NRFFAGFTQAEVKTL 125